Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00444  |
| T6SS type | Type Unknown |
| Strain | Methylomonas methanica MC09 |
| Replicon (RefSeq) | chromosome (NC_015572) |
| Location | 3805083..3816561 |
| Function | - |
| Comment | - |
| References | - |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | FHA | SPOR | TssJ | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| T6CP011891 | SPOR | METME_RS17245 | 3800885..3802105 | - | 1221 | WP_148262146.1 | D-alanyl-D-alanine carboxypeptidase |
| METME_RS17250 | 3802197..3803099 | - | 903 | WP_041364530.1 | cation diffusion facilitator family transporter | ||
| METME_RS23585 (tagF) | 3803482..3805086 | - | 1605 | WP_013820035.1 | type VI secretion system-associated protein TagF | ||
| T6CP004623 | TssM | METME_RS17265 (tssM) | 3805083..3808628 | - | 3546 | WP_013820036.1 | type VI secretion system membrane subunit TssM |
| T6CP004624 | TssL | METME_RS17270 (icmH) | 3808637..3810025 | - | 1389 | WP_013820037.1 | type IVB secretion system protein IcmH/DotU |
| T6CP004625 | TssK | METME_RS17275 (tssK) | 3810031..3811371 | - | 1341 | WP_013820038.1 | type VI secretion system baseplate subunit TssK |
| T6CP011890 | FHA | METME_RS17280 (tagH) | 3811407..3812900 | - | 1494 | WP_013820039.1 | type VI secretion system-associated FHA domain protein TagH |
| METME_RS17285 | 3812936..3815212 | - | 2277 | WP_013820040.1 | caspase family protein | ||
| METME_RS17290 | 3815288..3816088 | - | 801 | WP_148262147.1 | alpha/beta hydrolase | ||
| T6CP004626 | TssJ | METME_RS17295 (tssJ) | 3816088..3816561 | - | 474 | WP_013820042.1 | type VI secretion system lipoprotein TssJ |
| METME_RS17300 | 3816804..3818528 | + | 1725 | WP_013820043.1 | serine/threonine protein kinase | ||
| METME_RS17305 | 3818623..3819873 | + | 1251 | WP_013820044.1 | autotransporter outer membrane beta-barrel domain-containing protein | ||
| METME_RS17310 | 3819930..3820763 | - | 834 | WP_013820045.1 | GntR family transcriptional regulator |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
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