Detailed information of component protein
Summary
| Component ID | T6CP004625 |
| Component protein type | TssK |
| T6SS ID (Type) | T6SS00444  (Type Unknown) |
| Strain | Methylomonas methanica MC09 |
| Replicon | chromosome |
| Sequence | Protein sequence (447 a.a.); Nucleotide sequence (1341 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | METME_RS17275 |
| Coordinate (Strand) | 3810031..3811371 (-) |
| NCBI ID | WP_013820038.1 |
| RefSeq | NC_015572 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VasE | PF05936.14 | 8.7e-157 | 19..443 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-446 | MSENNRIVWSEGMFLRPQHFQQHDRYFESLVRGLSQGVRTYLWGFSRLKLDRTCLAIGKLGLSECSGVFQDGTPFNLPQDDDLPLPLEVPEDEKASVVYLALPLRRSDAIEVDSESSPDNMARYHLGERQVRDHNSGADGRYDVQIGSLKPRLMCDSQERSGYVCLGVARIVEVRADKTVILDEQYIPPAVHCSSAGILAGFARELQGLFHTRGEALAARVAGGGQGGGVAEIADFMLLQMINRYQPLLAHLANAAAMHPEEFFQLCLQLAGELSTFYRPGKRPMAFPDYKHDDLKFSFIPLIDELRGLLSMVLEQNAVQLPLAEVKPGVYVAKRPEINLLEGAIFVLAAKAQVSSELIRSHFPPQVKIGPVEDIQTLVRSALPGITIQALPVAPRQIPYHAGYSYFELNKQSELWGKMSASGGFAIHIGGSFPELELEFWAIRKG |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9947 | - | - |
Protein sequence: 447 a.a.
>T6CP004625 NC_015572:c3811371-3810031 [Methylomonas methanica MC09] [TssK]
MSENNRIVWSEGMFLRPQHFQQHDRYFESLVRGLSQGVRTYLWGFSRLKLDRTCLAIGKLGLSECSGVFQDGTPFNLPQD
DDLPLPLEVPEDEKASVVYLALPLRRSDAIEVDSESSPDNMARYHLGERQVRDHNSGADGRYDVQIGSLKPRLMCDSQER
SGYVCLGVARIVEVRADKTVILDEQYIPPAVHCSSAGILAGFARELQGLFHTRGEALAARVAGGGQGGGVAEIADFMLLQ
MINRYQPLLAHLANAAAMHPEEFFQLCLQLAGELSTFYRPGKRPMAFPDYKHDDLKFSFIPLIDELRGLLSMVLEQNAVQ
LPLAEVKPGVYVAKRPEINLLEGAIFVLAAKAQVSSELIRSHFPPQVKIGPVEDIQTLVRSALPGITIQALPVAPRQIPY
HAGYSYFELNKQSELWGKMSASGGFAIHIGGSFPELELEFWAIRKG*
MSENNRIVWSEGMFLRPQHFQQHDRYFESLVRGLSQGVRTYLWGFSRLKLDRTCLAIGKLGLSECSGVFQDGTPFNLPQD
DDLPLPLEVPEDEKASVVYLALPLRRSDAIEVDSESSPDNMARYHLGERQVRDHNSGADGRYDVQIGSLKPRLMCDSQER
SGYVCLGVARIVEVRADKTVILDEQYIPPAVHCSSAGILAGFARELQGLFHTRGEALAARVAGGGQGGGVAEIADFMLLQ
MINRYQPLLAHLANAAAMHPEEFFQLCLQLAGELSTFYRPGKRPMAFPDYKHDDLKFSFIPLIDELRGLLSMVLEQNAVQ
LPLAEVKPGVYVAKRPEINLLEGAIFVLAAKAQVSSELIRSHFPPQVKIGPVEDIQTLVRSALPGITIQALPVAPRQIPY
HAGYSYFELNKQSELWGKMSASGGFAIHIGGSFPELELEFWAIRKG*
Nucleotide sequence: 1341 bp
>T6CP004625 NC_015572:c3811371-3810031 [Methylomonas methanica MC09] [TssK]
ATGTCAGAAAATAATCGGATAGTCTGGTCTGAGGGGATGTTTCTTCGCCCTCAGCATTTTCAACAGCATGATCGCTATTT
TGAAAGCCTGGTGCGGGGCTTGTCCCAGGGGGTCAGAACGTATTTGTGGGGCTTTTCCCGCCTCAAATTGGATAGGACCT
GTCTGGCCATCGGAAAACTGGGGCTGAGCGAGTGCAGCGGGGTGTTTCAGGACGGCACGCCGTTTAATCTGCCGCAGGAC
GACGATCTGCCGTTGCCGCTGGAAGTGCCGGAAGACGAAAAAGCCAGCGTGGTTTACCTGGCCCTGCCGCTGCGGCGCTC
GGACGCTATCGAAGTGGACAGCGAATCCTCTCCGGATAATATGGCCCGTTATCATTTGGGCGAGCGGCAAGTGCGCGACC
ATAACAGCGGCGCGGACGGCCGTTACGATGTGCAGATAGGCAGTTTAAAGCCGCGCTTGATGTGCGATAGCCAGGAACGT
TCCGGCTATGTCTGTTTGGGCGTGGCGCGTATCGTGGAAGTGCGGGCCGATAAAACCGTTATTTTGGATGAACAATACAT
TCCGCCGGCCGTGCATTGTTCCAGTGCCGGTATTCTGGCCGGCTTCGCCCGCGAGCTGCAAGGCTTGTTTCATACTCGTG
GAGAGGCTTTGGCGGCAAGGGTGGCCGGCGGCGGGCAGGGTGGCGGTGTGGCGGAGATAGCCGATTTCATGTTGCTGCAA
ATGATCAACCGCTATCAACCCTTGCTGGCGCATTTGGCCAACGCCGCAGCCATGCATCCAGAAGAATTCTTTCAATTATG
TTTGCAACTTGCCGGCGAGTTGTCGACGTTTTACCGGCCCGGTAAGCGGCCGATGGCGTTTCCCGATTACAAACACGACG
ATTTGAAGTTCAGCTTTATACCGCTGATCGATGAATTGCGCGGTTTGTTGAGCATGGTGTTGGAGCAAAACGCCGTACAA
TTGCCGCTGGCGGAAGTCAAACCCGGTGTTTACGTGGCCAAACGTCCGGAAATAAATTTGCTGGAAGGTGCCATTTTCGT
TCTCGCGGCCAAGGCGCAAGTCTCCTCGGAATTGATTCGCTCGCACTTCCCGCCGCAAGTCAAGATCGGCCCGGTGGAAG
ATATCCAGACATTGGTTCGTTCGGCATTGCCCGGCATCACCATTCAGGCCCTGCCGGTGGCGCCGCGGCAGATTCCCTAT
CATGCCGGTTATTCCTATTTCGAATTGAATAAGCAAAGCGAGCTGTGGGGCAAAATGTCCGCCTCCGGCGGTTTCGCCAT
TCATATTGGCGGGAGTTTTCCGGAATTGGAGCTCGAGTTTTGGGCCATTAGAAAAGGTTGA
ATGTCAGAAAATAATCGGATAGTCTGGTCTGAGGGGATGTTTCTTCGCCCTCAGCATTTTCAACAGCATGATCGCTATTT
TGAAAGCCTGGTGCGGGGCTTGTCCCAGGGGGTCAGAACGTATTTGTGGGGCTTTTCCCGCCTCAAATTGGATAGGACCT
GTCTGGCCATCGGAAAACTGGGGCTGAGCGAGTGCAGCGGGGTGTTTCAGGACGGCACGCCGTTTAATCTGCCGCAGGAC
GACGATCTGCCGTTGCCGCTGGAAGTGCCGGAAGACGAAAAAGCCAGCGTGGTTTACCTGGCCCTGCCGCTGCGGCGCTC
GGACGCTATCGAAGTGGACAGCGAATCCTCTCCGGATAATATGGCCCGTTATCATTTGGGCGAGCGGCAAGTGCGCGACC
ATAACAGCGGCGCGGACGGCCGTTACGATGTGCAGATAGGCAGTTTAAAGCCGCGCTTGATGTGCGATAGCCAGGAACGT
TCCGGCTATGTCTGTTTGGGCGTGGCGCGTATCGTGGAAGTGCGGGCCGATAAAACCGTTATTTTGGATGAACAATACAT
TCCGCCGGCCGTGCATTGTTCCAGTGCCGGTATTCTGGCCGGCTTCGCCCGCGAGCTGCAAGGCTTGTTTCATACTCGTG
GAGAGGCTTTGGCGGCAAGGGTGGCCGGCGGCGGGCAGGGTGGCGGTGTGGCGGAGATAGCCGATTTCATGTTGCTGCAA
ATGATCAACCGCTATCAACCCTTGCTGGCGCATTTGGCCAACGCCGCAGCCATGCATCCAGAAGAATTCTTTCAATTATG
TTTGCAACTTGCCGGCGAGTTGTCGACGTTTTACCGGCCCGGTAAGCGGCCGATGGCGTTTCCCGATTACAAACACGACG
ATTTGAAGTTCAGCTTTATACCGCTGATCGATGAATTGCGCGGTTTGTTGAGCATGGTGTTGGAGCAAAACGCCGTACAA
TTGCCGCTGGCGGAAGTCAAACCCGGTGTTTACGTGGCCAAACGTCCGGAAATAAATTTGCTGGAAGGTGCCATTTTCGT
TCTCGCGGCCAAGGCGCAAGTCTCCTCGGAATTGATTCGCTCGCACTTCCCGCCGCAAGTCAAGATCGGCCCGGTGGAAG
ATATCCAGACATTGGTTCGTTCGGCATTGCCCGGCATCACCATTCAGGCCCTGCCGGTGGCGCCGCGGCAGATTCCCTAT
CATGCCGGTTATTCCTATTTCGAATTGAATAAGCAAAGCGAGCTGTGGGGCAAAATGTCCGCCTCCGGCGGTTTCGCCAT
TCATATTGGCGGGAGTTTTCCGGAATTGGAGCTCGAGTTTTGGGCCATTAGAAAAGGTTGA