Detailed information of component protein


Summary

Component ID T6CP011891
Component protein type SPOR
T6SS ID (Type) T6SS00444 insolico (Type Unknown)
Strain Methylomonas methanica MC09
Replicon chromosome
Sequence Protein sequence (407 a.a.); Nucleotide sequence (1221 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) METME_RS17245
Coordinate (Strand) 3800885..3802105 (-)
NCBI ID WP_148262146.1
RefSeq NC_015572
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Peptidase_S11 PF00768.22 4.6e-61 8..231
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-406 MLLLTSLPALARYAAIVIDADSGRVVHEVEATHRWYPASLTKVMTIYMTFAAIEAGRLHLHDTLTVSAHAARQPSSKLGLRQGQTISVEHAIMAVTTRSANDAAVVLAERLGGSESQFAGMMTQQAQRMGMYNSSFQNASGLPDEGQISSARDLALLSSALIRDFPQYYRYFSATEFAYKGRVLPNTNKILKTYPDADGLKTGFTCGSGYNLIASAKRNGRRLIGVLLGAHSSAERFQQMANLLDLGFEKSQVGAFGMPVTQLRDANFAPPPFQLSSNRCAGSAEQMGADSGSGRSEPIRIKPGKSTRLADNRRVKTKSAKGGAANGNWTVMLGDHRRKIDADVNLKQARYALGTAAKTGQPHVVRIKTKGKLLWRTEWMNLSSSQARDFCRKLRAKGRQCTLLPG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.8138 - -


  Protein sequence: 407 a.a.    

>T6CP011891 NC_015572:c3802105-3800885 [Methylomonas methanica MC09] [SPOR]
MLLLTSLPALARYAAIVIDADSGRVVHEVEATHRWYPASLTKVMTIYMTFAAIEAGRLHLHDTLTVSAHAARQPSSKLGL
RQGQTISVEHAIMAVTTRSANDAAVVLAERLGGSESQFAGMMTQQAQRMGMYNSSFQNASGLPDEGQISSARDLALLSSA
LIRDFPQYYRYFSATEFAYKGRVLPNTNKILKTYPDADGLKTGFTCGSGYNLIASAKRNGRRLIGVLLGAHSSAERFQQM
ANLLDLGFEKSQVGAFGMPVTQLRDANFAPPPFQLSSNRCAGSAEQMGADSGSGRSEPIRIKPGKSTRLADNRRVKTKSA
KGGAANGNWTVMLGDHRRKIDADVNLKQARYALGTAAKTGQPHVVRIKTKGKLLWRTEWMNLSSSQARDFCRKLRAKGRQ
CTLLPG*

  Nucleotide sequence: 1221 bp    

>T6CP011891 NC_015572:c3802105-3800885 [Methylomonas methanica MC09] [SPOR]
TTGTTATTACTGACGAGCTTGCCCGCGTTGGCGCGTTATGCGGCAATAGTCATCGATGCCGATAGCGGGCGTGTAGTGCA
CGAGGTGGAGGCGACACATCGCTGGTACCCGGCTTCCCTGACCAAAGTGATGACAATTTACATGACGTTTGCCGCTATCG
AAGCCGGCCGTTTGCATCTGCATGACACCCTGACCGTATCGGCGCATGCGGCCCGGCAGCCGAGTTCCAAATTAGGCTTG
CGGCAAGGGCAGACTATCAGCGTCGAACATGCCATTATGGCCGTGACTACCCGTTCCGCAAACGATGCCGCGGTGGTGTT
GGCGGAGCGCTTGGGCGGCAGCGAGTCGCAATTCGCCGGCATGATGACCCAGCAGGCGCAACGCATGGGTATGTACAATA
GTTCGTTCCAAAATGCCAGCGGTTTGCCGGACGAAGGCCAAATCAGCAGCGCACGCGATTTGGCCTTGCTTTCCTCTGCC
TTGATTCGGGATTTTCCGCAATATTACCGCTATTTTTCGGCCACGGAATTCGCCTATAAAGGCCGGGTTTTGCCGAATAC
CAACAAAATATTGAAAACCTATCCGGATGCGGACGGCTTGAAAACCGGCTTTACTTGCGGTTCCGGCTACAACCTGATTG
CGTCGGCCAAGCGTAACGGCCGCCGCTTGATCGGGGTGTTGTTGGGGGCGCATAGCAGCGCCGAGCGTTTCCAGCAAATG
GCTAACTTATTGGATCTCGGTTTTGAAAAGTCCCAGGTGGGCGCATTCGGCATGCCGGTAACCCAGTTAAGAGACGCCAA
TTTCGCCCCGCCGCCGTTCCAGCTGTCGTCCAATCGTTGCGCCGGCAGCGCCGAACAGATGGGGGCGGATTCCGGTTCCG
GTCGCTCGGAACCCATTCGCATCAAGCCCGGCAAATCCACCCGCTTGGCCGATAACCGCAGGGTTAAAACCAAAAGCGCA
AAGGGCGGTGCGGCCAACGGAAATTGGACCGTCATGCTGGGCGACCACCGCCGCAAAATCGACGCCGATGTCAACTTGAA
GCAAGCGCGTTATGCCTTGGGTACGGCCGCAAAAACCGGTCAACCGCATGTGGTCAGAATCAAAACCAAGGGCAAACTGC
TGTGGCGCACGGAATGGATGAACTTGAGCTCAAGCCAAGCCAGGGATTTCTGCAGGAAATTGCGAGCTAAAGGAAGGCAG
TGCACCCTGTTGCCGGGTTAA