Detailed information of component protein


Summary

Component ID T6CP011890
Component protein type FHA
T6SS ID (Type) T6SS00444 insolico (Type Unknown)
Strain Methylomonas methanica MC09
Replicon chromosome
Sequence Protein sequence (498 a.a.); Nucleotide sequence (1494 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) METME_RS17280
Coordinate (Strand) 3811407..3812900 (-)
NCBI ID WP_013820039.1
RefSeq NC_015572
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
FHA PF00498.28 7e-13 29..96
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-497 MVLILKVLTYKGVPSSQPISAQFEGQGGSIGRAPNNQLVLPDPEKFISRVHASIVCEAGHYFIEDSSTGGTFLNDSDIPLQQSRAPLSDGEKIRIGEYELLATIADSATAGFAASIEQPVRQLDFAQNSVLDGPFVPAQPAASQPKADFFSSFVEQPESSAFHQSFTPPQIAETPGNAAVDDLDFGDLLSKLDELPGISHPASSKPAADLPPLPADFFAEETPKPAEASPFPSAVESETSWPPFDEAPAEAPQVPPFAVSEAEPPAPQQQAVEPVFPGEPAKRYEIVEPPMPAAQPVQPQTHNAAADDVLFREFLAGAGISDLHLLPPEQWPALMRTSGELLRAMVQGLMQVLRARAELKSQFRVSVTTMRSVDNNPLKFTPSVDDAMKLILAPTNPGFLPPKQAVSEGFNDIMNHQIAMTAGIQAALAEILRSFDPQLIERTQAEGVLFQKKTKCWEYYVEKYPQLKAVAQEEFFGDAFADAYEKQMLLLSRAAKN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.8079 - -


  Protein sequence: 498 a.a.    

>T6CP011890 NC_015572:c3812900-3811407 [Methylomonas methanica MC09] [FHA]
MVLILKVLTYKGVPSSQPISAQFEGQGGSIGRAPNNQLVLPDPEKFISRVHASIVCEAGHYFIEDSSTGGTFLNDSDIPL
QQSRAPLSDGEKIRIGEYELLATIADSATAGFAASIEQPVRQLDFAQNSVLDGPFVPAQPAASQPKADFFSSFVEQPESS
AFHQSFTPPQIAETPGNAAVDDLDFGDLLSKLDELPGISHPASSKPAADLPPLPADFFAEETPKPAEASPFPSAVESETS
WPPFDEAPAEAPQVPPFAVSEAEPPAPQQQAVEPVFPGEPAKRYEIVEPPMPAAQPVQPQTHNAAADDVLFREFLAGAGI
SDLHLLPPEQWPALMRTSGELLRAMVQGLMQVLRARAELKSQFRVSVTTMRSVDNNPLKFTPSVDDAMKLILAPTNPGFL
PPKQAVSEGFNDIMNHQIAMTAGIQAALAEILRSFDPQLIERTQAEGVLFQKKTKCWEYYVEKYPQLKAVAQEEFFGDAF
ADAYEKQMLLLSRAAKN*

  Nucleotide sequence: 1494 bp    

>T6CP011890 NC_015572:c3812900-3811407 [Methylomonas methanica MC09] [FHA]
ATGGTGTTGATTCTCAAGGTCCTAACTTATAAAGGCGTACCTTCCAGTCAGCCCATTAGCGCTCAGTTCGAAGGTCAAGG
CGGCTCGATTGGCCGGGCGCCAAATAATCAACTGGTTTTACCCGATCCGGAAAAATTTATTTCGCGGGTGCATGCCAGCA
TCGTATGCGAAGCCGGACATTATTTTATTGAAGATAGTAGTACCGGCGGCACTTTTCTCAACGATAGCGATATCCCGTTG
CAGCAAAGCCGGGCGCCGTTATCGGACGGCGAAAAAATCCGCATAGGCGAATACGAGCTTCTGGCCACTATTGCCGATTC
GGCTACGGCCGGTTTTGCCGCCAGCATAGAACAACCGGTAAGGCAGTTGGATTTTGCCCAGAACAGCGTACTGGACGGTC
CGTTCGTGCCGGCTCAGCCCGCGGCTTCCCAGCCCAAGGCGGATTTTTTTTCCAGCTTTGTTGAACAGCCGGAATCTTCG
GCTTTCCATCAAAGTTTTACCCCGCCGCAAATCGCCGAAACACCGGGTAACGCAGCGGTAGACGATCTGGACTTCGGCGA
TTTGTTATCTAAATTGGATGAATTGCCGGGTATCAGTCATCCCGCCAGTAGTAAGCCGGCCGCCGATCTGCCGCCCTTGC
CGGCGGACTTTTTTGCCGAAGAAACGCCTAAGCCGGCAGAGGCAAGCCCTTTCCCGTCCGCGGTGGAGTCCGAAACGTCT
TGGCCGCCATTCGATGAAGCGCCGGCGGAAGCGCCGCAAGTTCCCCCATTCGCTGTGTCGGAAGCTGAGCCGCCGGCACC
TCAACAGCAGGCGGTCGAGCCTGTTTTCCCCGGAGAACCCGCGAAACGATATGAAATTGTCGAGCCGCCAATGCCGGCTG
CGCAGCCTGTTCAGCCTCAGACGCATAATGCTGCAGCGGATGACGTGTTATTCCGCGAATTTTTAGCCGGGGCCGGCATT
AGCGATCTGCATTTGCTGCCGCCAGAACAATGGCCGGCCCTGATGAGAACGTCCGGCGAACTTTTGCGTGCCATGGTGCA
GGGTTTGATGCAGGTATTAAGAGCAAGGGCGGAATTGAAAAGCCAGTTTCGCGTCTCGGTGACCACCATGCGTTCGGTCG
ATAACAATCCGCTAAAATTTACGCCGAGCGTGGACGATGCCATGAAACTGATCCTGGCACCCACCAACCCCGGGTTTTTG
CCGCCCAAGCAAGCTGTCAGTGAAGGATTTAACGACATCATGAACCATCAGATTGCCATGACCGCCGGTATACAGGCGGC
GTTGGCGGAAATACTGCGCAGTTTCGATCCGCAACTGATTGAAAGGACGCAAGCCGAGGGTGTTTTGTTTCAGAAAAAGA
CCAAGTGCTGGGAATATTATGTTGAAAAATATCCGCAGCTCAAAGCGGTCGCGCAGGAAGAGTTTTTTGGCGACGCGTTT
GCCGATGCCTATGAAAAACAAATGCTGTTACTAAGCCGGGCAGCGAAAAATTAA