Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00276  |
| T6SS type | Type Unknown |
| Strain | Paraburkholderia phymatum STM815 |
| Replicon (RefSeq) | plasmid pBPHY01 (NC_010625) |
| Location | 1673089..1686527 |
| Function | - |
| Comment | - |
| References | - |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | PAAR | TssA | TssF | TssG | TssI | TssL |
| Number | 1 | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| BPHY_RS34815 | 1668895..1669593 | - | 699 | WP_012406172.1 | ABC transporter ATP-binding protein | ||
| BPHY_RS34820 | 1669596..1670732 | - | 1137 | WP_012406173.1 | ABC transporter permease | ||
| BPHY_RS34825 | 1670801..1671271 | - | 471 | WP_012406174.1 | universal stress protein | ||
| BPHY_RS34830 | 1671857..1673092 | - | 1236 | WP_012406175.1 | hypothetical protein | ||
| T6CP002764 | TssA | BPHY_RS34835 | 1673089..1674174 | - | 1086 | WP_012406176.1 | type VI secretion system ImpA family N-terminal domain-containing protein |
| T6CP002765 | TssG | BPHY_RS34840 (tssG) | 1674171..1675247 | - | 1077 | WP_012406177.1 | type VI secretion system baseplate subunit TssG |
| BPHY_RS34845 | 1675247..1675870 | - | 624 | WP_012406178.1 | hypothetical protein | ||
| T6CP002766 | TssL | BPHY_RS34850 (tssL) | 1675944..1677233 | - | 1290 | WP_012406179.1 | type VI secretion system protein TssL, long form |
| T6CP011674 | PAAR | BPHY_RS40505 | 1677230..1677508 | - | 279 | WP_012406180.1 | PAAR domain-containing protein |
| BPHY_RS34855 | 1677605..1678570 | - | 966 | WP_012406181.1 | hypothetical protein | ||
| BPHY_RS34860 | 1678572..1681142 | - | 2571 | WP_012406182.1 | hypothetical protein | ||
| BPHY_RS34865 | 1681139..1681993 | - | 855 | WP_012406183.1 | DUF4123 domain-containing protein | ||
| T6CP002767 | TssI | BPHY_RS34870 (tssI) | 1682001..1684541 | - | 2541 | WP_012406184.1 | type VI secretion system tip protein VgrG |
| T6CP002768 | TssF | BPHY_RS34875 (tssF) | 1684626..1686527 | - | 1902 | WP_012406185.1 | type VI secretion system baseplate subunit TssF |
| BPHY_RS34880 | 1686902..1688593 | - | 1692 | WP_012406186.1 | TniQ family protein | ||
| BPHY_RS34885 | 1688586..1690034 | - | 1449 | pseudogene | ATP-binding protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
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