Detailed information of component protein


Summary

Component ID T6CP011674
Component protein type PAAR
T6SS ID (Type) T6SS00276 insolico (Type Unknown)
Strain Paraburkholderia phymatum STM815
Replicon plasmid pBPHY01
Sequence Protein sequence (93 a.a.); Nucleotide sequence (279 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BPHY_RS40505
Coordinate (Strand) 1677230..1677508 (-)
NCBI ID WP_012406180.1
RefSeq NC_010625
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
PAAR_motif PF05488.15 4e-23 8..84
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-92 VSLLIIRVGDSTDHGGEVITGSPTHKLGGKPIARLNDLVECPQRYPDGRPHGVNRIIEAHPTFAVGGVRVALHGHHTECGCALIGSSVGSIG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9698 - -


  Protein sequence: 93 a.a.    

>T6CP011674 NC_010625:c1677508-1677230 [Paraburkholderia phymatum STM815] [PAAR]
VSLLIIRVGDSTDHGGEVITGSPTHKLGGKPIARLNDLVECPQRYPDGRPHGVNRIIEAHPTFAVGGVRVALHGHHTECG
CALIGSSVGSIG*

  Nucleotide sequence: 279 bp    

>T6CP011674 NC_010625:c1677508-1677230 [Paraburkholderia phymatum STM815] [PAAR]
GTGAGTCTTTTGATCATTCGCGTCGGAGACAGTACCGACCACGGTGGGGAAGTGATTACAGGTTCGCCGACACACAAGCT
CGGCGGAAAACCCATTGCACGTCTAAATGATCTTGTTGAGTGCCCCCAGCGGTATCCGGACGGCCGTCCTCATGGCGTCA
ACAGGATTATCGAAGCTCATCCAACCTTTGCCGTTGGCGGCGTGCGTGTAGCGCTTCATGGACACCATACGGAATGCGGG
TGCGCGCTCATCGGTAGCAGCGTTGGGAGCATCGGATGA