Detailed information of component protein
Summary
| Component ID | T6CP002765 |
| Component protein type | TssG |
| T6SS ID (Type) | T6SS00276  (Type Unknown) |
| Strain | Paraburkholderia phymatum STM815 |
| Replicon | plasmid pBPHY01 |
| Sequence | Protein sequence (359 a.a.); Nucleotide sequence (1077 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BPHY_RS34840 |
| Coordinate (Strand) | 1674171..1675247 (-) |
| NCBI ID | WP_012406177.1 |
| RefSeq | NC_010625 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_TssG | PF06996.13 | 4.3e-98 | 26..324 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-358 | MERAAQDSLLFGRKLSPALLEHLQAEPWRYGFISLMRRIGADPAIDPVGTAALPDAESFRLGQRPSLIFAPREIADASVKNGKLHMRLFGLGMLGPNGPLPIHVTEIAREREEQRRDPALSNFLDIFHHRSMTLFYRAWASAQSAASLDRPEHDRFSLYVASLSGYPLRRERPWPLPAHARLSAAPHLVREARNPEGLCSALAHYFGVPVRLDEFVLHWMELAPENCCVMGEHRASSFMGSGAVIGGHVPDRQYRFRIVIGPLDIEDYHRFTPQGADLLRLIEWVRAFVSEEFDWELELQIKPHSAPSAVLGGPQQLGWSSWMGQSPSSEPVTGMCFEPERYVQQLRQNMIKQERIEP |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9804 | - | - |
Protein sequence: 359 a.a.
>T6CP002765 NC_010625:c1675247-1674171 [Paraburkholderia phymatum STM815] [TssG]
MERAAQDSLLFGRKLSPALLEHLQAEPWRYGFISLMRRIGADPAIDPVGTAALPDAESFRLGQRPSLIFAPREIADASVK
NGKLHMRLFGLGMLGPNGPLPIHVTEIAREREEQRRDPALSNFLDIFHHRSMTLFYRAWASAQSAASLDRPEHDRFSLYV
ASLSGYPLRRERPWPLPAHARLSAAPHLVREARNPEGLCSALAHYFGVPVRLDEFVLHWMELAPENCCVMGEHRASSFMG
SGAVIGGHVPDRQYRFRIVIGPLDIEDYHRFTPQGADLLRLIEWVRAFVSEEFDWELELQIKPHSAPSAVLGGPQQLGWS
SWMGQSPSSEPVTGMCFEPERYVQQLRQNMIKQERIEP*
MERAAQDSLLFGRKLSPALLEHLQAEPWRYGFISLMRRIGADPAIDPVGTAALPDAESFRLGQRPSLIFAPREIADASVK
NGKLHMRLFGLGMLGPNGPLPIHVTEIAREREEQRRDPALSNFLDIFHHRSMTLFYRAWASAQSAASLDRPEHDRFSLYV
ASLSGYPLRRERPWPLPAHARLSAAPHLVREARNPEGLCSALAHYFGVPVRLDEFVLHWMELAPENCCVMGEHRASSFMG
SGAVIGGHVPDRQYRFRIVIGPLDIEDYHRFTPQGADLLRLIEWVRAFVSEEFDWELELQIKPHSAPSAVLGGPQQLGWS
SWMGQSPSSEPVTGMCFEPERYVQQLRQNMIKQERIEP*
Nucleotide sequence: 1077 bp
>T6CP002765 NC_010625:c1675247-1674171 [Paraburkholderia phymatum STM815] [TssG]
ATGGAGCGGGCGGCACAAGACTCACTCCTCTTCGGCAGAAAGCTGTCGCCGGCATTGCTCGAGCATCTGCAGGCCGAACC
CTGGCGGTACGGGTTCATTTCGCTGATGCGCCGCATCGGTGCGGATCCGGCGATTGACCCGGTGGGGACCGCGGCGCTGC
CCGATGCAGAGTCCTTCCGCCTGGGGCAGCGACCGAGCCTCATCTTCGCGCCGCGTGAGATCGCGGATGCCTCGGTGAAG
AACGGCAAGCTGCACATGCGGCTCTTTGGCCTGGGCATGCTGGGGCCGAACGGGCCGCTGCCGATCCACGTCACGGAGAT
TGCACGCGAGCGTGAGGAGCAAAGACGGGACCCCGCGCTCAGCAACTTTCTGGACATCTTCCATCACCGGTCGATGACGC
TGTTCTATCGCGCCTGGGCCTCGGCGCAGTCGGCCGCCAGTCTCGACCGGCCCGAACATGACCGGTTTTCGCTCTATGTC
GCCAGTCTTTCCGGCTATCCGCTAAGGCGGGAGCGGCCATGGCCGCTCCCTGCACACGCGCGCCTGTCGGCGGCGCCGCA
TCTCGTGCGCGAGGCCCGCAATCCGGAGGGGCTGTGCAGCGCGCTCGCCCATTACTTTGGCGTGCCGGTCAGGCTTGACG
AGTTCGTCCTGCACTGGATGGAGCTGGCGCCGGAGAACTGCTGTGTCATGGGCGAGCACCGGGCCTCGTCGTTCATGGGC
TCGGGCGCGGTGATCGGCGGGCATGTGCCCGACCGCCAGTACCGGTTTCGCATCGTGATTGGCCCGCTGGATATCGAGGA
CTATCACCGCTTCACGCCACAGGGGGCGGACCTGCTGCGGTTGATCGAATGGGTGCGGGCTTTCGTGAGCGAGGAGTTCG
ACTGGGAACTCGAGCTGCAGATCAAGCCGCACAGCGCGCCTTCGGCCGTGCTGGGTGGTCCGCAGCAACTCGGCTGGTCC
AGCTGGATGGGGCAGTCGCCTTCGTCTGAGCCGGTTACCGGAATGTGTTTCGAGCCGGAGCGCTACGTGCAGCAGCTCCG
GCAGAACATGATCAAGCAGGAAAGAATCGAACCATGA
ATGGAGCGGGCGGCACAAGACTCACTCCTCTTCGGCAGAAAGCTGTCGCCGGCATTGCTCGAGCATCTGCAGGCCGAACC
CTGGCGGTACGGGTTCATTTCGCTGATGCGCCGCATCGGTGCGGATCCGGCGATTGACCCGGTGGGGACCGCGGCGCTGC
CCGATGCAGAGTCCTTCCGCCTGGGGCAGCGACCGAGCCTCATCTTCGCGCCGCGTGAGATCGCGGATGCCTCGGTGAAG
AACGGCAAGCTGCACATGCGGCTCTTTGGCCTGGGCATGCTGGGGCCGAACGGGCCGCTGCCGATCCACGTCACGGAGAT
TGCACGCGAGCGTGAGGAGCAAAGACGGGACCCCGCGCTCAGCAACTTTCTGGACATCTTCCATCACCGGTCGATGACGC
TGTTCTATCGCGCCTGGGCCTCGGCGCAGTCGGCCGCCAGTCTCGACCGGCCCGAACATGACCGGTTTTCGCTCTATGTC
GCCAGTCTTTCCGGCTATCCGCTAAGGCGGGAGCGGCCATGGCCGCTCCCTGCACACGCGCGCCTGTCGGCGGCGCCGCA
TCTCGTGCGCGAGGCCCGCAATCCGGAGGGGCTGTGCAGCGCGCTCGCCCATTACTTTGGCGTGCCGGTCAGGCTTGACG
AGTTCGTCCTGCACTGGATGGAGCTGGCGCCGGAGAACTGCTGTGTCATGGGCGAGCACCGGGCCTCGTCGTTCATGGGC
TCGGGCGCGGTGATCGGCGGGCATGTGCCCGACCGCCAGTACCGGTTTCGCATCGTGATTGGCCCGCTGGATATCGAGGA
CTATCACCGCTTCACGCCACAGGGGGCGGACCTGCTGCGGTTGATCGAATGGGTGCGGGCTTTCGTGAGCGAGGAGTTCG
ACTGGGAACTCGAGCTGCAGATCAAGCCGCACAGCGCGCCTTCGGCCGTGCTGGGTGGTCCGCAGCAACTCGGCTGGTCC
AGCTGGATGGGGCAGTCGCCTTCGTCTGAGCCGGTTACCGGAATGTGTTTCGAGCCGGAGCGCTACGTGCAGCAGCTCCG
GCAGAACATGATCAAGCAGGAAAGAATCGAACCATGA