Detailed information of component protein


Summary

Component ID T6CP002767
Component protein type TssI
T6SS ID (Type) T6SS00276 insolico (Type Unknown)
Strain Paraburkholderia phymatum STM815
Replicon plasmid pBPHY01
Sequence Protein sequence (847 a.a.); Nucleotide sequence (2541 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BPHY_RS34870
Coordinate (Strand) 1682001..1684541 (-)
NCBI ID WP_012406184.1
RefSeq NC_010625
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 2.5e-74 34..380
DUF2345 PF10106.11 2.5e-47 668..814
T6SS_Vgr PF13296.8 1.2e-34 528..634
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-846 MFKPLQPRTLSVASDALPLRAGEPVLIAQRVHGTEALGNLFDYRVELATRDTPTCRLSDAQPLVIPGQLIGKSLTISIEFEGKGVFVPGMPGNLGAANVGAGVRQITGLITAVSSTGSDDRRAYYELTVRPWLWMATQNSESRAYQNLNVVEVTQAILKGGQYPWPYELRLGAVGLQNNVYPPRDYVRQYWESDYAFLTRIWREWGIYYLFDGMTLVLCDSPGSHKKHHDAYDTVTYHAPDGKRIDEEHIHRLRISQQITPGDVTLNDYDYTRSLGKFDVNQSQYSKSSFDNIEQYHWGEYSQPLAGAMGLSGDPNDYDTEGAYLARVRLNALRCRRLRIYGTGNLRGLTTGKTFRLEGHPQREVNADYLVVSTSLDVRNPDEITRSAGDGVQYQCVTDFVLQPASAFFKNRLRKKPQAHAETAVVVGPANRPVWLDGYARTKVSFLWDRHSSRDENSSCWVRVGLPWHGGPHSFIAVPRIGDELTIDYHEGDPDKPYISASKVNEFNQPPFELPKNQALTGLVGSGLDGKGHNYVVTDDTPGQLQVQVASDQDYSRLSLGYITRIDYGTGRQQARGSGWELATDAWGVLRANRGMLITTEARGGAQAAAKDMGETVQRLTKARDTHESLAELAQQNNAQEQGADQSEITAALKAQNDAIRGGAKSGPNDFPEFAEAHVTIASPSGIETTTAGSTHIASGEHLALTAGEHLGMAVGKSLFATIREKLRIFVYQSGIRLIAGAGSIDIQALSDAVNVLAKLKIHQSAKRIEIWAEEELSLRGGKSYLTLNNAGIENGTPGQWQSYASTHQMPGPKSGPEDVPAAQLNVCEMSAASASSQHAAIVPLA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9542 - -


  Protein sequence: 847 a.a.    

>T6CP002767 NC_010625:c1684541-1682001 [Paraburkholderia phymatum STM815] [TssI]
MFKPLQPRTLSVASDALPLRAGEPVLIAQRVHGTEALGNLFDYRVELATRDTPTCRLSDAQPLVIPGQLIGKSLTISIEF
EGKGVFVPGMPGNLGAANVGAGVRQITGLITAVSSTGSDDRRAYYELTVRPWLWMATQNSESRAYQNLNVVEVTQAILKG
GQYPWPYELRLGAVGLQNNVYPPRDYVRQYWESDYAFLTRIWREWGIYYLFDGMTLVLCDSPGSHKKHHDAYDTVTYHAP
DGKRIDEEHIHRLRISQQITPGDVTLNDYDYTRSLGKFDVNQSQYSKSSFDNIEQYHWGEYSQPLAGAMGLSGDPNDYDT
EGAYLARVRLNALRCRRLRIYGTGNLRGLTTGKTFRLEGHPQREVNADYLVVSTSLDVRNPDEITRSAGDGVQYQCVTDF
VLQPASAFFKNRLRKKPQAHAETAVVVGPANRPVWLDGYARTKVSFLWDRHSSRDENSSCWVRVGLPWHGGPHSFIAVPR
IGDELTIDYHEGDPDKPYISASKVNEFNQPPFELPKNQALTGLVGSGLDGKGHNYVVTDDTPGQLQVQVASDQDYSRLSL
GYITRIDYGTGRQQARGSGWELATDAWGVLRANRGMLITTEARGGAQAAAKDMGETVQRLTKARDTHESLAELAQQNNAQ
EQGADQSEITAALKAQNDAIRGGAKSGPNDFPEFAEAHVTIASPSGIETTTAGSTHIASGEHLALTAGEHLGMAVGKSLF
ATIREKLRIFVYQSGIRLIAGAGSIDIQALSDAVNVLAKLKIHQSAKRIEIWAEEELSLRGGKSYLTLNNAGIENGTPGQ
WQSYASTHQMPGPKSGPEDVPAAQLNVCEMSAASASSQHAAIVPLA*

  Nucleotide sequence: 2541 bp    

>T6CP002767 NC_010625:c1684541-1682001 [Paraburkholderia phymatum STM815] [TssI]
ATGTTCAAACCGTTGCAGCCCCGCACACTGAGCGTGGCGTCCGACGCGTTGCCCCTCCGCGCTGGCGAGCCCGTGCTCAT
TGCCCAGCGCGTGCATGGCACCGAGGCACTGGGCAACCTCTTTGATTACCGGGTGGAGCTGGCCACGCGGGACACCCCGA
CCTGTCGGCTGTCGGATGCGCAGCCGCTCGTGATCCCCGGGCAGCTGATCGGCAAGTCCCTCACCATTTCGATCGAGTTC
GAGGGTAAGGGCGTATTCGTGCCGGGCATGCCCGGCAACCTTGGGGCCGCGAATGTCGGTGCCGGGGTGCGCCAGATTAC
CGGCCTCATCACCGCGGTTTCCAGCACGGGCAGTGACGACCGGCGGGCGTATTACGAACTGACGGTTCGTCCCTGGCTCT
GGATGGCCACCCAGAACAGCGAAAGCCGTGCTTACCAGAACCTCAATGTGGTCGAGGTGACCCAGGCGATACTCAAGGGC
GGGCAGTATCCGTGGCCCTACGAACTGCGGCTGGGCGCAGTGGGCCTGCAAAACAACGTCTATCCGCCGCGCGACTACGT
CCGCCAGTACTGGGAGAGTGATTACGCGTTCCTGACCAGAATCTGGCGCGAATGGGGGATTTATTACCTGTTCGATGGCA
TGACGCTGGTCCTCTGCGATTCGCCAGGTTCCCACAAGAAGCACCACGACGCGTACGACACCGTAACGTACCACGCACCC
GACGGCAAGCGCATTGATGAAGAGCATATTCACAGGCTCCGGATCTCGCAGCAGATCACGCCGGGCGATGTGACGCTCAA
CGACTACGACTACACGCGCTCACTCGGGAAGTTCGACGTGAACCAGTCGCAGTACAGCAAGTCGTCATTCGACAATATCG
AGCAGTACCACTGGGGCGAATACTCGCAGCCGCTCGCGGGCGCCATGGGGCTGTCGGGCGATCCGAATGACTATGACACG
GAGGGCGCGTACCTGGCGCGCGTGCGGTTGAATGCGCTGCGTTGCCGGCGGCTGCGCATCTATGGCACGGGCAACCTTCG
CGGCCTGACCACGGGCAAGACGTTCCGGCTTGAAGGGCATCCGCAGCGAGAAGTCAACGCGGACTATCTCGTGGTGTCGA
CCTCGCTCGATGTGCGCAATCCGGACGAGATCACGCGCTCAGCGGGCGACGGTGTGCAGTACCAGTGTGTGACCGATTTC
GTGCTGCAGCCGGCCAGTGCGTTCTTCAAGAACCGGCTGAGAAAGAAGCCGCAGGCCCATGCCGAAACCGCCGTGGTTGT
GGGACCCGCCAACCGGCCGGTCTGGCTCGATGGTTACGCACGTACCAAGGTTTCCTTTCTGTGGGACCGGCACAGCAGCC
GTGACGAAAATTCGAGCTGCTGGGTGCGCGTGGGTTTGCCCTGGCATGGTGGGCCGCACAGCTTTATCGCGGTGCCGCGC
ATCGGCGACGAGCTGACAATCGACTATCACGAGGGCGACCCCGACAAGCCCTACATCTCGGCGAGCAAGGTCAACGAGTT
CAACCAGCCACCGTTCGAGCTGCCGAAGAATCAGGCGCTTACGGGGCTGGTGGGCAGCGGTCTGGACGGCAAGGGCCATA
ACTACGTGGTGACCGACGATACCCCCGGCCAGTTGCAGGTCCAGGTGGCGAGCGATCAGGACTACTCGCGTCTCTCTCTC
GGCTACATCACCCGGATCGACTACGGCACGGGTCGGCAGCAGGCACGCGGAAGCGGATGGGAACTGGCCACGGACGCGTG
GGGCGTGCTGCGCGCCAATCGTGGCATGCTGATTACCACAGAGGCCCGTGGTGGTGCGCAGGCTGCAGCCAAGGACATGG
GCGAGACGGTGCAGCGCCTGACCAAGGCCCGCGATACCCACGAAAGTCTCGCAGAGCTTGCCCAGCAAAACAATGCGCAG
GAGCAGGGCGCAGACCAGAGTGAAATCACGGCCGCCCTCAAGGCGCAGAACGATGCAATTCGCGGCGGCGCGAAAAGCGG
TCCCAACGACTTCCCGGAATTTGCCGAAGCCCATGTCACCATCGCCAGTCCTTCGGGCATTGAGACGACCACGGCAGGCA
GCACCCACATCGCGAGCGGTGAACACCTCGCGCTGACGGCGGGCGAACATCTGGGTATGGCGGTCGGCAAGTCGCTGTTT
GCGACGATCCGCGAGAAGCTGAGGATCTTTGTTTACCAGTCAGGAATCCGGCTGATCGCCGGAGCGGGATCGATCGACAT
CCAGGCGCTGTCCGACGCAGTCAATGTGCTGGCAAAACTCAAGATTCACCAGAGCGCGAAGCGCATCGAGATCTGGGCGG
AAGAAGAGCTTTCGCTGCGCGGAGGCAAAAGCTATCTGACGCTCAACAATGCCGGCATCGAAAATGGCACGCCCGGCCAG
TGGCAGTCCTACGCCTCGACCCACCAGATGCCGGGGCCAAAGAGCGGCCCCGAAGACGTGCCCGCCGCGCAGCTCAACGT
CTGCGAGATGAGTGCCGCTAGCGCATCGAGCCAGCACGCCGCCATCGTTCCCCTTGCCTGA