Detailed information of component protein


Summary

Component ID T6CP002768
Component protein type TssF
T6SS ID (Type) T6SS00276 insolico (Type Unknown)
Strain Paraburkholderia phymatum STM815
Replicon plasmid pBPHY01
Sequence Protein sequence (634 a.a.); Nucleotide sequence (1902 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BPHY_RS34875
Coordinate (Strand) 1684626..1686527 (-)
NCBI ID WP_012406185.1
RefSeq NC_010625
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 5.8e-198 1..630
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-633 MDPRTLEFYTRELRFQRAMASEFAADHLKIARRLGMEAGDIGDPYVERLVQGSAFVNARIQMRFDDEFPQLTQALLSCVYPNYLLPTPSIAVARFYPGGKAGDLVSGHRITRGTLATSKLPEGEKTPCQFSLCHDVTLYPLEISFAKLGGIPPDIYGMDRFVPPHRRVHGGLRLRIRTTGDVPVASLQGLDRLPVCLAGDAKLASHLHELIHTAAIATVAGEPGRFSEAGYAYHTVTSNAVIQEGIGPEESVLPLASRKFLGHNLVHEYFACPERFYFFTLTGLAAGLRNISGHEAEIVVLLDRPAGDLADRVDASMFALFCAPVINLFPLRTESMPIREGAPETHIVPVEKRPLDFELHSLERVLGQVTEESEVLEFRPLHQALMRDEDSHGRYFTVRREQHLAPGQSRRYGTHSTYVSTESFLQLVGPDGEPYDNGDDGEIHFVSVQAWVTNRDLPSLLRCNGVRDLDLRQSAPVSSIGLIRPPGRPKAPFAQGIKAWQLLMHLDIDHSVFDDRYDEPHPGEGLQSFLRLYLSDDAVAHRRQVESLTAATLTPVNRIIPNQQPPVARVLECGITVDESGFDGASPYVFGLVLEHYLARHVSMHSYTAIVLDSKQRGRIAQWPPRPGTRSVV


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9864 - -


  Protein sequence: 634 a.a.    

>T6CP002768 NC_010625:c1686527-1684626 [Paraburkholderia phymatum STM815] [TssF]
MDPRTLEFYTRELRFQRAMASEFAADHLKIARRLGMEAGDIGDPYVERLVQGSAFVNARIQMRFDDEFPQLTQALLSCVY
PNYLLPTPSIAVARFYPGGKAGDLVSGHRITRGTLATSKLPEGEKTPCQFSLCHDVTLYPLEISFAKLGGIPPDIYGMDR
FVPPHRRVHGGLRLRIRTTGDVPVASLQGLDRLPVCLAGDAKLASHLHELIHTAAIATVAGEPGRFSEAGYAYHTVTSNA
VIQEGIGPEESVLPLASRKFLGHNLVHEYFACPERFYFFTLTGLAAGLRNISGHEAEIVVLLDRPAGDLADRVDASMFAL
FCAPVINLFPLRTESMPIREGAPETHIVPVEKRPLDFELHSLERVLGQVTEESEVLEFRPLHQALMRDEDSHGRYFTVRR
EQHLAPGQSRRYGTHSTYVSTESFLQLVGPDGEPYDNGDDGEIHFVSVQAWVTNRDLPSLLRCNGVRDLDLRQSAPVSSI
GLIRPPGRPKAPFAQGIKAWQLLMHLDIDHSVFDDRYDEPHPGEGLQSFLRLYLSDDAVAHRRQVESLTAATLTPVNRII
PNQQPPVARVLECGITVDESGFDGASPYVFGLVLEHYLARHVSMHSYTAIVLDSKQRGRIAQWPPRPGTRSVV*

  Nucleotide sequence: 1902 bp    

>T6CP002768 NC_010625:c1686527-1684626 [Paraburkholderia phymatum STM815] [TssF]
ATGGATCCGCGCACGCTTGAGTTCTACACGCGCGAGCTTCGCTTCCAGCGCGCGATGGCATCGGAATTTGCTGCTGACCA
TCTGAAGATCGCAAGGCGCCTTGGCATGGAGGCGGGCGACATTGGCGATCCTTATGTCGAGCGCCTTGTTCAAGGCTCCG
CCTTTGTGAACGCGCGCATCCAGATGCGCTTCGACGATGAATTCCCGCAGCTCACCCAGGCGCTGCTTTCCTGCGTCTAT
CCCAACTACCTCCTGCCCACGCCATCCATCGCCGTGGCGCGGTTCTATCCGGGCGGCAAGGCGGGCGACCTCGTGTCCGG
TCACCGCATCACGCGCGGCACCCTCGCCACCTCGAAACTTCCCGAGGGCGAGAAGACGCCCTGCCAGTTTTCCCTTTGTC
ACGACGTCACGCTGTATCCGCTTGAGATCAGCTTCGCGAAGCTGGGCGGCATTCCGCCCGACATCTACGGCATGGACCGT
TTCGTGCCACCGCACCGGCGTGTACACGGCGGGTTGCGCCTGCGTATCCGCACAACCGGCGATGTACCGGTGGCAAGCCT
GCAGGGACTGGACAGGCTGCCCGTCTGCCTGGCGGGCGACGCGAAGCTCGCCTCGCACCTGCACGAGCTCATTCACACGG
CCGCGATTGCCACTGTGGCCGGCGAGCCGGGGCGGTTCAGTGAGGCCGGGTATGCATACCACACCGTCACCTCGAATGCC
GTGATCCAGGAGGGGATTGGCCCAGAGGAGAGCGTCCTGCCGCTTGCCTCGCGAAAGTTTCTCGGCCACAACCTCGTGCA
CGAGTATTTCGCGTGCCCCGAGCGCTTTTACTTCTTCACGCTCACCGGTCTCGCGGCGGGGCTGCGGAACATCAGCGGCC
ATGAAGCCGAGATCGTGGTCCTGCTGGATCGTCCTGCGGGAGATCTGGCGGACCGTGTCGATGCGTCGATGTTCGCACTG
TTCTGTGCCCCCGTGATCAACCTCTTTCCCCTGCGCACCGAAAGCATGCCGATCCGCGAAGGTGCCCCGGAAACGCACAT
TGTGCCGGTGGAGAAGCGGCCACTCGACTTCGAACTGCACTCACTGGAGCGTGTGCTTGGGCAGGTTACCGAAGAGTCGG
AGGTGCTGGAATTCCGTCCGCTGCACCAGGCGCTGATGCGCGACGAAGACAGTCACGGGCGTTACTTCACGGTACGGCGC
GAGCAGCACCTCGCCCCGGGCCAGTCCCGCCGGTACGGCACACACTCGACGTATGTCAGCACGGAGTCGTTCCTGCAGCT
CGTTGGGCCGGATGGTGAACCGTACGACAACGGTGACGACGGCGAGATCCACTTCGTGTCGGTGCAGGCGTGGGTGACCA
ACCGCGACCTGCCCAGCCTGCTGCGCTGCAATGGCGTGCGCGACCTGGATCTGCGCCAGTCGGCACCGGTCTCGAGTATC
GGTCTGATCCGGCCACCTGGCAGACCCAAAGCGCCGTTCGCTCAGGGCATCAAGGCCTGGCAACTGCTGATGCACCTCGA
TATCGATCATTCGGTCTTCGATGACCGGTACGACGAGCCGCACCCGGGCGAAGGGTTGCAAAGTTTTCTGCGGCTTTATC
TCTCCGACGACGCCGTGGCGCATCGCCGGCAGGTCGAGAGCCTTACCGCAGCGACGCTCACGCCGGTCAACCGGATCATC
CCGAACCAGCAGCCACCGGTGGCGCGGGTGCTCGAATGCGGCATCACGGTCGACGAAAGCGGCTTCGATGGCGCGAGCCC
CTATGTCTTTGGTCTCGTGCTTGAGCACTACCTGGCCCGGCACGTTTCGATGCATTCGTACACGGCGATCGTGCTGGATT
CGAAGCAGCGCGGGCGTATTGCGCAGTGGCCACCCCGACCGGGTACACGCAGCGTGGTGTAG