Detailed information of component protein


Summary

Component ID T6CP002764
Component protein type TssA
T6SS ID (Type) T6SS00276 insolico (Type Unknown)
Strain Paraburkholderia phymatum STM815
Replicon plasmid pBPHY01
Sequence Protein sequence (362 a.a.); Nucleotide sequence (1086 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) BPHY_RS34835
Coordinate (Strand) 1673089..1674174 (-)
NCBI ID WP_012406176.1
RefSeq NC_010625
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 1.5e-32 22..147
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-361 MSSNGKKNPQKPGSRVATHDWMAPISAGSPCGSDLEYDPEFVVLSASVAAKATAQYGDFVGTPEPVNWSDVDRDCRRLMVRSKDVRLAVLFTRCRTRLAAAAGFAEGLGLLSGWLATFPDQVHPQPAVDEDRSAALEIRMNALQALTDTDGLIADLREIALTRSTATRLQLRDVERAFAHPRPSDALTPDSVTRLLDELRMRHPEVLAGFDEALESLTAIEGWCREHLDAYAPDLGALRRMLCHVARPADSGPVHDASGDAGGAYPDSDDAALAGDLPAAVDEHEADTAPEPRASPVTGKTPDRQAALSLIREARQWFEQHEPSSPIPVLLHRAEQFVGKRYPEVVGAIPADLLEQWEREA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.8947 - -


  Protein sequence: 362 a.a.    

>T6CP002764 NC_010625:c1674174-1673089 [Paraburkholderia phymatum STM815] [TssA]
MSSNGKKNPQKPGSRVATHDWMAPISAGSPCGSDLEYDPEFVVLSASVAAKATAQYGDFVGTPEPVNWSDVDRDCRRLMV
RSKDVRLAVLFTRCRTRLAAAAGFAEGLGLLSGWLATFPDQVHPQPAVDEDRSAALEIRMNALQALTDTDGLIADLREIA
LTRSTATRLQLRDVERAFAHPRPSDALTPDSVTRLLDELRMRHPEVLAGFDEALESLTAIEGWCREHLDAYAPDLGALRR
MLCHVARPADSGPVHDASGDAGGAYPDSDDAALAGDLPAAVDEHEADTAPEPRASPVTGKTPDRQAALSLIREARQWFEQ
HEPSSPIPVLLHRAEQFVGKRYPEVVGAIPADLLEQWEREA*

  Nucleotide sequence: 1086 bp    

>T6CP002764 NC_010625:c1674174-1673089 [Paraburkholderia phymatum STM815] [TssA]
ATGAGCAGCAACGGGAAGAAGAACCCGCAGAAGCCCGGGAGCCGCGTCGCGACCCACGACTGGATGGCGCCGATTTCGGC
CGGATCGCCGTGCGGAAGCGATCTCGAATACGACCCGGAATTCGTCGTGCTGAGTGCGAGCGTTGCCGCGAAGGCAACCG
CGCAATACGGTGATTTCGTTGGTACACCGGAGCCGGTGAACTGGAGCGATGTGGACCGGGACTGCCGCCGTCTGATGGTA
CGCAGCAAGGACGTGCGTCTGGCCGTACTCTTTACACGGTGTCGGACACGGCTCGCGGCCGCCGCCGGCTTCGCGGAGGG
GCTGGGCCTGTTGTCCGGATGGCTGGCCACCTTCCCGGATCAGGTACACCCGCAACCTGCAGTGGACGAAGACCGTTCGG
CCGCGCTCGAAATCCGCATGAACGCGCTGCAGGCGTTGACCGACACCGATGGGCTGATCGCGGATCTGAGGGAAATCGCG
CTGACCCGGTCGACGGCCACGCGCCTGCAGTTGCGGGATGTCGAGCGGGCGTTTGCGCATCCCAGACCAAGTGACGCGCT
GACACCGGACTCCGTGACCAGGCTGCTTGACGAGCTGCGCATGCGGCACCCCGAGGTCCTTGCCGGCTTTGACGAGGCGC
TGGAAAGCCTGACTGCGATCGAAGGCTGGTGCCGGGAGCACCTGGATGCCTACGCCCCCGATCTCGGCGCGCTCAGACGA
ATGCTTTGCCATGTTGCCCGGCCGGCGGACAGTGGCCCGGTGCATGACGCCAGCGGCGACGCAGGCGGGGCATACCCGGA
TAGCGATGATGCCGCACTGGCGGGAGACCTGCCGGCTGCAGTTGATGAGCATGAAGCGGACACGGCGCCCGAACCGCGAG
CCAGCCCTGTAACCGGAAAGACTCCCGATCGCCAGGCGGCGCTCAGTCTGATCCGAGAAGCGCGGCAGTGGTTCGAGCAG
CATGAGCCCAGCAGCCCGATTCCGGTGCTGCTGCACAGGGCCGAGCAGTTCGTTGGCAAGCGCTACCCGGAGGTCGTCGG
GGCGATTCCGGCGGACCTTCTTGAACAGTGGGAGCGTGAAGCATGA