Detailed information of T6SS

Note: only experimentally validated proteins are displayed in the graph.


Summary

T6SS ID T6SS00021 insolico
T6SS type Type i3
Strain Yersinia pestis CO92
Replicon (RefSeq) chromosome (NC_003143)
Location 3272776..3302045
Function -
Comment -
References
[1] Boyer F et al (2009) Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 0.488888889. [PudMed:19284603]
insolico Bioinformatics investigation has been performed.

T6SS components and genome coordinates

ComponentTagLTssATssBTssCTssDTssFTssGTssHTssJTssK
Number1111111111


Component ID Component Locus tag (Gene) Coordinate Strand Size (bp) NCBI ID Product
YPO_RS15580 (tadA) 3269085..3269687 - 603 WP_002211563.1 tRNA adenosine(34) deaminase TadA
YPO_RS15585 (yfhb) 3269758..3270453 - 696 WP_002211564.1 phosphatidylglycerophosphatase C
YPO_RS15590 (murQ) 3270680..3271567 - 888 WP_002211565.1 N-acetylmuramic acid 6-phosphate etherase
YPO_RS15595 3271775..3272614 + 840 WP_002211566.1 MurR/RpiR family transcriptional regulator
YPO_RS15600 3272776..3273036 + 261 WP_002211567.1 YfhL family 4Fe-4S dicluster ferredoxin
YPO_RS15605 (tnpA) 3273192..3273650 - 459 WP_002213775.1 IS200/IS605-like element IS1541B family transposase
YPO_RS15610 3273852..3274232 - 381 WP_002211568.1 holo-ACP synthase
YPO_RS15615 (pdxJ) 3274232..3274963 - 732 WP_002211569.1 pyridoxine 5'-phosphate synthase
YPO_RS15620 (istB) 3275153..3275932 - 780 WP_001297096.1 IS21-like element IS100kyp family helper ATPase IstB
YPO_RS15625 (istA) 3275932..3276954 - 1023 WP_000255944.1 IS21-like element IS100 family transposase
YPO_RS15630 3277040..3277636 - 597 pseudogene DotU family type IV/VI secretion system protein
T6CP000156 TssK YPO_RS15635 (tssK) 3277633..3278982 - 1350 WP_002211571.1 type VI secretion system baseplate subunit TssK
T6CP000157 TssJ YPO_RS15640 (tssJ) 3278986..3279525 - 540 WP_002211572.1 type VI secretion system lipoprotein TssJ
T6CP000158 TssD YPO_RS15645 3279799..3280284 - 486 WP_002211573.1 type VI secretion system tube protein Hcp
T6CP000159 TssC YPO_RS15650 (tssC) 3280610..3282112 - 1503 WP_002211574.1 type VI secretion system contractile sheath large subunit
T6CP000160 TssB YPO_RS15655 (tssB) 3282136..3282660 - 525 WP_002211575.1 type VI secretion system contractile sheath small subunit
YPO_RS15660 3282765..3283373 - 609 WP_002211576.1 type 1 fimbrial protein
YPO_RS15665 3283358..3284548 - 1191 WP_002211577.1 fimbrial biogenesis outer membrane usher protein
YPO_RS15670 3284573..3285781 + 1209 WP_002209743.1 IS256 family transposase
YPO_RS15675 3285803..3287353 - 1551 WP_002215157.1 fimbrial biogenesis outer membrane usher protein
YPO_RS15680 3287481..3288242 - 762 WP_002211579.1 fimbria/pilus periplasmic chaperone
YPO_RS15685 3288399..3288944 - 546 WP_002211580.1 type 1 fimbrial protein
T6CP000161 TssH YPO_RS15690 (tssH) 3289145..3291820 - 2676 WP_002215317.1 type VI secretion system ATPase TssH
T6CP000162 TssF YPO_RS15695 (tssF) 3292603..3294483 + 1881 WP_002211582.1 type VI secretion system baseplate subunit TssF
T6CP000163 TssG YPO_RS15700 (tssG) 3294483..3295508 + 1026 WP_002211583.1 type VI secretion system baseplate subunit TssG
T6CP000164 TssA YPO_RS15705 3295607..3296788 + 1182 WP_002211584.1 ImpA family type VI secretion system protein
YPO_RS15710 3296795..3297826 + 1032 WP_002215319.1 fimbrial protein
YPO_RS15715 3297866..3299203 + 1338 WP_002211586.1 glycosyl transferase
YPO_RS15720 3299200..3299883 + 684 WP_002211587.1 hypothetical protein
T6CP011409 TagL YPO_RS15725 3299884..3301566 + 1683 WP_002211588.1 OmpA family protein
YPO_RS15730 3301563..3302045 + 483 WP_002215321.1 DcrB-related protein
YPO_RS15735 3302403..3303005 - 603 WP_002211590.1 LuxR family transcriptional regulator
YPO_RS15740 (mltB) 3304260..3305354 - 1095 WP_002211594.1 lytic murein transglycosylase B
YPO_RS15745 3305683..3306702 + 1020 WP_002211596.1 iron ABC transporter substrate-binding protein
flank Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files

    

Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Regulator ID Locus tag (Gene) Regulator type Regulatory pathway Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Target (Regulation)

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Effector ID Locus tag (Gene) Classification Cognate immunity protein Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Immunity protein ID Locus tag (Gene) Cognate effector Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID

experimental Experimental investigation has been performed.
Accessory protein ID Locus tag (Gene) Type             Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Related structure protein Related effector