Detailed information of component protein


Summary

Component ID T6CP000159
Component protein type TssC
T6SS ID (Type) T6SS00021 insolico (Type i3)
Strain Yersinia pestis CO92
Replicon chromosome
Sequence Protein sequence (501 a.a.); Nucleotide sequence (1503 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPO_RS15650
Coordinate (Strand) 3280610..3282112 (-)
NCBI ID WP_002211574.1
RefSeq NC_003143
Uniprot ID A0A0E8XLM4_9GAMM, Q668S2_YERPS, A0A0U1QUJ4_YERP3, A0A0E1NLU4_YERPA, A0A0T9QX22_9GAMM, A0A0H2YHV8_YERPN, A0A0H3B3I3_YERPY, A0A380PGA5_YERPE, A0A0T9JCU8_YERPU
KEGG ID ypc:BZ23_2246, ypq:DJ40_3878, ypn:YPN_1443, yps:YPTB2665, ypu:BZ21_1962, ypi:YpsIP31758_1368, ype:YPO2938, ypa:YPA_2129, ypo:BZ17_3973, ysi:BF17_22810, ypr:BZ20_3544, ypy:YPK_1480
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 9.5e-136 69..372
VipB_2 PF18945.2 1.8e-44 382..493
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-500 MSTQDAKTKQATVASATEYSDFNTLLTKEFKAKSEQTIAAVEGAVKTLAEQALANSVTVSDDAYKSIASIIAEIDRKLSDQINLILHHQEFQSLESAWRGLHYLVNNTETDEKLRLRFLDISKDELRRNMKRYKGVAWDQSPLFKKIYEEEYGQLGGEPYGCLVADYYFDHTAPDVDLLASIGKVAASAHVPFITGAAPSVLQMESWQELSNPRDLTKIFTQNLEYAAWNSLRQSEDSRYIGLAMPRFLSRLPYGINTNPVDAFHFEETTDGADHSKYVWSNAAYAMAVNINRSFKEYGWCTLIRGVESGGVVEGLPCHTFPTDDGGIDMKCPTEIAISDRREAELAKNGFIPLVHRKNTDYAAFIGAQSLQKPAEYYDSDATANANLSARLPYLFACSRFAHYLKCIVRDKIGSFKERDEMQRWLNDWVMNYVDGDPANSSLETKARRPLAAAEVIVEEVEGNPGYYQAKFFLRPHFQLEGLTVSLRMVAKLPSLKDVA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9788 - -


  Protein sequence: 501 a.a.    

>T6CP000159 NC_003143:c3282112-3280610 [Yersinia pestis CO92] [TssC]
MSTQDAKTKQATVASATEYSDFNTLLTKEFKAKSEQTIAAVEGAVKTLAEQALANSVTVSDDAYKSIASIIAEIDRKLSD
QINLILHHQEFQSLESAWRGLHYLVNNTETDEKLRLRFLDISKDELRRNMKRYKGVAWDQSPLFKKIYEEEYGQLGGEPY
GCLVADYYFDHTAPDVDLLASIGKVAASAHVPFITGAAPSVLQMESWQELSNPRDLTKIFTQNLEYAAWNSLRQSEDSRY
IGLAMPRFLSRLPYGINTNPVDAFHFEETTDGADHSKYVWSNAAYAMAVNINRSFKEYGWCTLIRGVESGGVVEGLPCHT
FPTDDGGIDMKCPTEIAISDRREAELAKNGFIPLVHRKNTDYAAFIGAQSLQKPAEYYDSDATANANLSARLPYLFACSR
FAHYLKCIVRDKIGSFKERDEMQRWLNDWVMNYVDGDPANSSLETKARRPLAAAEVIVEEVEGNPGYYQAKFFLRPHFQL
EGLTVSLRMVAKLPSLKDVA*

  Nucleotide sequence: 1503 bp    

>T6CP000159 NC_003143:c3282112-3280610 [Yersinia pestis CO92] [TssC]
ATGTCCACTCAAGACGCAAAAACTAAACAAGCTACAGTCGCCAGTGCGACGGAATATAGCGATTTTAATACATTACTGAC
TAAAGAATTTAAAGCGAAGTCTGAGCAAACGATAGCCGCAGTAGAAGGTGCCGTTAAAACGTTGGCTGAGCAAGCGCTGG
CTAATTCGGTCACGGTGTCAGACGATGCTTATAAAAGTATTGCTTCCATTATTGCAGAGATTGATCGCAAGCTATCAGAT
CAGATTAACTTAATTTTGCACCACCAAGAATTCCAGTCTCTGGAAAGCGCATGGCGTGGGCTGCACTATTTAGTCAATAA
CACCGAGACTGATGAGAAGTTGAGATTACGTTTCCTCGACATTTCTAAAGATGAATTACGCCGTAACATGAAGCGTTATA
AAGGTGTTGCTTGGGATCAAAGCCCATTATTCAAAAAAATCTATGAAGAAGAATATGGCCAATTGGGTGGCGAACCATAC
GGTTGCCTGGTAGCAGACTATTACTTTGACCATACTGCACCTGACGTTGACTTGTTGGCTTCAATTGGCAAAGTTGCCGC
TTCTGCCCACGTGCCATTTATTACAGGTGCTGCACCGTCTGTGTTGCAAATGGAATCTTGGCAAGAACTGTCAAACCCAC
GTGATTTGACGAAGATCTTCACTCAGAATCTTGAGTATGCCGCATGGAACTCACTGCGTCAGTCTGAAGACTCTCGCTAT
ATCGGCCTGGCGATGCCACGTTTCTTGTCGCGTCTGCCTTATGGGATTAACACCAATCCGGTAGATGCCTTCCACTTTGA
AGAGACGACTGATGGCGCGGATCACAGCAAATATGTGTGGTCAAATGCGGCTTATGCGATGGCTGTTAACATCAACCGAT
CTTTCAAAGAGTATGGCTGGTGTACGCTGATTCGTGGTGTGGAAAGTGGTGGTGTTGTTGAAGGCCTGCCATGCCATACC
TTCCCGACGGATGACGGCGGTATTGATATGAAATGCCCAACAGAAATCGCTATTTCTGACCGTCGTGAAGCGGAACTGGC
CAAGAATGGCTTTATTCCACTGGTTCACAGAAAGAATACGGATTACGCGGCATTCATTGGCGCGCAGTCCCTGCAAAAAC
CTGCAGAATATTACGATTCGGATGCAACGGCGAACGCCAACCTTTCCGCTCGTCTGCCATACCTGTTTGCTTGTTCACGT
TTTGCACATTATCTGAAGTGCATCGTGCGTGACAAAATCGGCTCTTTTAAAGAGCGTGATGAGATGCAACGTTGGTTGAA
TGATTGGGTGATGAACTATGTTGATGGTGACCCAGCTAACTCTTCCCTGGAAACTAAAGCGCGCCGTCCTTTAGCCGCCG
CTGAAGTGATTGTTGAAGAAGTTGAAGGTAACCCTGGTTACTATCAGGCTAAATTCTTCTTACGCCCTCATTTCCAGTTA
GAAGGTTTGACAGTATCCCTGCGTATGGTTGCTAAACTGCCTTCGCTGAAAGACGTAGCATAA