Detailed information of component protein


Summary

Component ID T6CP011409
Component protein type TagL
T6SS ID (Type) T6SS00021 insolico (Type i3)
Strain Yersinia pestis CO92
Replicon chromosome
Sequence Protein sequence (561 a.a.); Nucleotide sequence (1683 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPO_RS15725
Coordinate (Strand) 3299884..3301566 (+)
NCBI ID WP_002211588.1
RefSeq NC_003143
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
OmpA PF00691.22 1.3e-17 441..539
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-9 MFKVKLNKT
Transmembrane helix 10-27 LSLLWLAAVGALLVSVNF
Inside 28-31 KGNA
Transmembrane helix 32-54 LWNNVIFITFLALMVLAIWKHYA
Outside 55-560 LKPKHPQVSTPIPQETAEPVEQESTVILILGPYAEKWFSNPESPDSTRFSSHAVWILITNPAALQKRLTYIAEHHPSARVLTFFPFLPDVYENAAVMMSKLTVWQNTFSTLSLRSPLPCVFAIYAQLSNERLSHNSDNAYWTGNINLANQQPIEITQALQSLSQRLELQDINHSRFATQRNVMAHNLFTWLNESGVTNLLQSIFSRTPLRLTDVILSDNGKGFIRHGAWSAWLEKKFGIIPSLASTLSLPPFPAVINDQKPAMKPRVKTPVIKPTPASRGWLWSVCFAAVLLASHMLNTLWQEKNRHEQFNQQMVPLDNISDFSAQYLARSITQLTDEGKILTTCVNTFDVTRWGLSQCKTLLSQINRRIESYENIPVFSFAQKLPLFDSNSTKLKLNSQTNEMMMELLSLVERNKEKKILIVGHSDNTGSSSMNMALSEQRALALRDWLIKRSDITVDNFITKGMGASEPVATNHTEAGREQNRRVEVLILPTQDRTRMTEPKPL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9566 - -


  Protein sequence: 561 a.a.    

>T6CP011409 NC_003143:3299884-3301566 [Yersinia pestis CO92] [TagL]
MFKVKLNKTLSLLWLAAVGALLVSVNFKGNALWNNVIFITFLALMVLAIWKHYALKPKHPQVSTPIPQETAEPVEQESTV
ILILGPYAEKWFSNPESPDSTRFSSHAVWILITNPAALQKRLTYIAEHHPSARVLTFFPFLPDVYENAAVMMSKLTVWQN
TFSTLSLRSPLPCVFAIYAQLSNERLSHNSDNAYWTGNINLANQQPIEITQALQSLSQRLELQDINHSRFATQRNVMAHN
LFTWLNESGVTNLLQSIFSRTPLRLTDVILSDNGKGFIRHGAWSAWLEKKFGIIPSLASTLSLPPFPAVINDQKPAMKPR
VKTPVIKPTPASRGWLWSVCFAAVLLASHMLNTLWQEKNRHEQFNQQMVPLDNISDFSAQYLARSITQLTDEGKILTTCV
NTFDVTRWGLSQCKTLLSQINRRIESYENIPVFSFAQKLPLFDSNSTKLKLNSQTNEMMMELLSLVERNKEKKILIVGHS
DNTGSSSMNMALSEQRALALRDWLIKRSDITVDNFITKGMGASEPVATNHTEAGREQNRRVEVLILPTQDRTRMTEPKPL
*

  Nucleotide sequence: 1683 bp    

>T6CP011409 NC_003143:3299884-3301566 [Yersinia pestis CO92] [TagL]
ATGTTTAAGGTTAAATTGAATAAAACGCTCTCTCTATTATGGCTGGCTGCGGTCGGCGCCCTATTGGTGAGTGTGAATTT
TAAGGGAAATGCGTTATGGAATAACGTTATTTTCATTACTTTCCTGGCGCTGATGGTTCTTGCCATCTGGAAACATTACG
CCCTCAAACCCAAACACCCCCAAGTGTCGACTCCCATTCCGCAGGAGACAGCGGAACCTGTAGAACAGGAGAGTACGGTT
ATTTTAATTCTCGGTCCCTATGCTGAGAAATGGTTTAGTAACCCAGAATCGCCAGACAGTACACGTTTTTCCAGCCATGC
GGTTTGGATATTAATCACGAATCCCGCCGCGCTGCAAAAACGCCTCACATATATTGCTGAACATCATCCATCCGCTCGGG
TATTGACCTTTTTCCCTTTCTTGCCGGATGTCTATGAGAATGCAGCAGTGATGATGTCAAAACTCACTGTGTGGCAGAAC
ACTTTTTCAACGTTATCACTGCGATCCCCCCTCCCCTGCGTATTTGCTATTTACGCGCAGTTGAGTAATGAACGCCTTAG
CCATAATTCTGATAACGCATATTGGACTGGAAATATTAATCTTGCGAACCAGCAGCCTATCGAGATTACGCAAGCCCTAC
AGTCACTGAGCCAACGACTTGAGTTACAAGACATCAATCACTCAAGATTTGCAACTCAGCGTAATGTTATGGCGCATAAT
TTATTTACTTGGTTGAATGAATCGGGGGTGACAAACCTTCTGCAATCTATTTTCTCTCGCACCCCCTTACGGCTAACAGA
TGTCATTTTGTCGGATAATGGCAAAGGGTTCATCAGGCATGGTGCCTGGTCAGCCTGGCTGGAAAAAAAGTTTGGCATCA
TACCAAGCTTAGCCTCAACCTTGTCACTGCCACCTTTCCCAGCGGTGATCAATGACCAGAAGCCCGCAATGAAACCACGG
GTGAAAACACCGGTGATAAAACCTACCCCCGCATCCCGCGGGTGGTTATGGAGTGTATGCTTCGCCGCGGTGCTATTAGC
CTCACATATGCTAAACACCCTGTGGCAAGAAAAAAACCGGCATGAGCAATTTAACCAACAGATGGTGCCGTTGGACAATA
TCAGCGATTTTTCTGCTCAGTACCTGGCACGCAGCATCACCCAGTTAACTGATGAAGGTAAAATATTAACCACATGCGTT
AATACATTTGATGTCACACGTTGGGGGCTGTCTCAATGCAAGACGTTATTAAGCCAAATCAACCGCCGGATTGAATCCTA
TGAAAATATTCCTGTTTTCAGTTTTGCCCAAAAGCTCCCTCTGTTTGACTCAAACAGTACCAAGCTGAAACTGAACTCAC
AAACTAATGAAATGATGATGGAGTTGTTATCACTGGTCGAACGGAATAAAGAGAAAAAAATCTTAATTGTTGGCCATTCT
GATAACACAGGCAGTTCCTCCATGAACATGGCACTTTCCGAACAGCGTGCGCTGGCCCTTCGCGATTGGTTAATTAAACG
CAGTGATATCACTGTCGATAATTTTATTACCAAGGGAATGGGGGCTTCAGAACCGGTTGCGACCAATCACACGGAAGCGG
GTCGAGAACAAAACAGACGCGTCGAAGTACTGATATTACCCACACAAGATAGAACAAGAATGACGGAGCCTAAACCTTTA
TGA