SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP000160
Component protein type	TssB
T6SS ID (Type)	T6SS00021 (Type i3)
Strain	Yersinia pestis CO92
Replicon	chromosome
Sequence	Protein sequence (175 a.a.); Nucleotide sequence (525 bp)
Reference	[1] Boyer F, Fichant G, Berthod J, et al. Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources? BMC Genomics. 2009 Mar 12;10:104. doi: 10.1186/1471-2164-10-104. PMID: 19284603

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	YPO_RS15655
Coordinate (Strand)	3282136..3282660 (-)
NCBI ID	WP_002211575.1
RefSeq	NC_003143
Uniprot ID	Q668S1_YERPS, A0A0U1QVR4_YERP3, A0A0E1NM55_YERPA, A0A0H2YG87_YERPN, A0A0H3B2H9_YERPY, A0A380PEA5_YERPE, A0A0T9JDD6_YERPU
KEGG ID	yps:YPTB2666, ypo:BZ17_3972, ypr:BZ20_3543, ypu:BZ21_1963, ypa:YPA_2130, ypi:YpsIP31758_1367, ypy:YPK_1479, ype:YPO2939, ypn:YPN_1442, ypc:BZ23_2247, ypq:DJ40_3877
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_VipA	PF05591.14	1.4e-56	12..162

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-174	MVSKSNSQKFIARNRAPRVQIEYDVEIYGSEKKVELPFVMGVLADLSGKPLEPLPSVADRKLLDIDIDNFDERMKAMKPRVAFAVLNTLTGEGQLMVDITFESMDDFSPDAIAKKVDSLSQLLDARTQLANLQTYMDGKAGAEELVMKLLKDKSLLTTLASAPKAKQSAVDTPQ

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9956	-	-

Protein sequence: 175 a.a.

						>T6CP000160 NC_003143:c3282660-3282136 [Yersinia pestis CO92] [TssB]
MVSKSNSQKFIARNRAPRVQIEYDVEIYGSEKKVELPFVMGVLADLSGKPLEPLPSVADRKLLDIDIDNFDERMKAMKPR
VAFAVLNTLTGEGQLMVDITFESMDDFSPDAIAKKVDSLSQLLDARTQLANLQTYMDGKAGAEELVMKLLKDKSLLTTLA
SAPKAKQSAVDTPQ*					

Nucleotide sequence: 525 bp

						>T6CP000160 NC_003143:c3282660-3282136 [Yersinia pestis CO92] [TssB]
ATGGTTAGCAAAAGTAATTCTCAAAAGTTTATCGCTCGAAACCGAGCGCCACGCGTGCAGATTGAATACGATGTGGAAAT
ATACGGTAGTGAAAAGAAGGTTGAATTACCTTTCGTTATGGGGGTATTAGCAGATTTATCCGGTAAACCTCTTGAGCCTT
TACCTTCAGTCGCTGACAGAAAACTGTTAGATATCGATATTGATAATTTCGATGAGCGCATGAAAGCAATGAAACCACGT
GTTGCATTCGCCGTGCTGAATACATTGACTGGGGAAGGCCAGTTAATGGTCGATATTACGTTTGAGAGTATGGATGATTT
CTCTCCTGACGCTATCGCGAAAAAAGTTGATTCATTGTCTCAATTATTAGATGCCCGAACTCAACTTGCCAACTTGCAGA
CTTATATGGATGGTAAGGCTGGTGCTGAGGAATTAGTTATGAAATTGCTGAAAGACAAATCATTACTGACAACGCTTGCA
TCCGCACCGAAAGCAAAACAATCCGCTGTTGATACTCCACAGTAA					