Detailed information of component protein


Summary

Component ID T6CP000156
Component protein type TssK
T6SS ID (Type) T6SS00021 insolico (Type i3)
Strain Yersinia pestis CO92
Replicon chromosome
Sequence Protein sequence (450 a.a.); Nucleotide sequence (1350 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPO_RS15635
Coordinate (Strand) 3277633..3278982 (-)
NCBI ID WP_002211571.1
RefSeq NC_003143
Uniprot ID Q668S5_YERPS, A0A0U1R0Q3_YERP3, A0A0E1NWA0_YERPA, A0A0H2YID3_YERPN, A0A0H3B1M0_YERPY, A0A5P8YHX0_YERPE, A0A3G5IZL1_YERPU
KEGG ID ypq:DJ40_3881, ypy:YPK_1483, ypn:YPN_1446, ypu:BZ21_1959, ype:YPO2934, ypa:YPA_2126, ypc:BZ23_2243, ypr:BZ20_3547, ypi:YpsIP31758_1371, yps:YPTB2662, ypo:BZ17_3976
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 1.3e-141 19..446
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-449 VRTNKVVWSEGLFLRPQLFQQQERYLEYYAHKRAATITPFFWGFAQYEIDREALSYGKLVLRSGKGVLPDGTPFDIPGHAELPEPLTITPEHLGKLIYLAVPLRLDNSDETIFDEHDMSSLARFYAYEAALNDTNAIRQGPKPVQLSRLRLRLVSEGEMTESWIGLPLTKVRAIQPDGSVLLHTEDYIPPVTGYAASSLLSEWLTHLNGLVKMRAEMLANRLSNSDGKASASAEIVDYLLLQIFNKYEPILDHLRHIPELPPITLYQELAKFSGELSTFIRTKTRRPRPAPGYDHAKLYASIRPLVDEVHELLNQILVRAGQMIPLETKGNGVWSASVLPNELRSFSNLVLAVHAQLPMDVLQHQFSVQTKISAPQQLHELVRSHLPGLELQRLPVPPRQIPYSAGYVYFELIKNGPFWDKVSNAGAIALHVAGDFPALKMELWGIRDS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9873 - -


  Protein sequence: 450 a.a.    

>T6CP000156 NC_003143:c3278982-3277633 [Yersinia pestis CO92] [TssK]
VRTNKVVWSEGLFLRPQLFQQQERYLEYYAHKRAATITPFFWGFAQYEIDREALSYGKLVLRSGKGVLPDGTPFDIPGHA
ELPEPLTITPEHLGKLIYLAVPLRLDNSDETIFDEHDMSSLARFYAYEAALNDTNAIRQGPKPVQLSRLRLRLVSEGEMT
ESWIGLPLTKVRAIQPDGSVLLHTEDYIPPVTGYAASSLLSEWLTHLNGLVKMRAEMLANRLSNSDGKASASAEIVDYLL
LQIFNKYEPILDHLRHIPELPPITLYQELAKFSGELSTFIRTKTRRPRPAPGYDHAKLYASIRPLVDEVHELLNQILVRA
GQMIPLETKGNGVWSASVLPNELRSFSNLVLAVHAQLPMDVLQHQFSVQTKISAPQQLHELVRSHLPGLELQRLPVPPRQ
IPYSAGYVYFELIKNGPFWDKVSNAGAIALHVAGDFPALKMELWGIRDS*

  Nucleotide sequence: 1350 bp    

>T6CP000156 NC_003143:c3278982-3277633 [Yersinia pestis CO92] [TssK]
GTGAGAACTAACAAAGTCGTTTGGAGTGAGGGGCTTTTTCTTCGCCCACAACTTTTTCAACAGCAAGAGCGCTATCTTGA
ATATTACGCCCATAAGCGAGCTGCAACGATAACCCCATTCTTTTGGGGATTTGCGCAATATGAAATTGATAGAGAAGCAC
TCTCGTATGGCAAATTAGTATTGCGATCTGGGAAGGGCGTGTTACCCGACGGTACACCATTTGATATTCCCGGCCATGCT
GAATTGCCTGAACCGCTCACTATCACCCCAGAACATCTGGGTAAGTTGATCTATCTGGCGGTACCACTGCGCCTGGATAA
CAGTGATGAAACCATTTTTGATGAGCACGATATGAGCTCATTGGCACGTTTTTACGCCTATGAAGCTGCGCTCAACGATA
CCAATGCCATTCGGCAAGGGCCGAAGCCGGTACAACTGTCAAGATTACGTCTCAGATTAGTCTCAGAAGGTGAGATGACA
GAATCATGGATTGGGCTGCCATTAACCAAAGTCAGAGCGATTCAGCCTGATGGGAGTGTCTTGCTACACACCGAAGACTA
TATTCCTCCGGTGACGGGTTATGCCGCAAGTTCATTGCTGTCTGAATGGCTAACCCATCTTAATGGTTTGGTTAAAATGC
GCGCAGAGATGTTGGCCAATCGCTTGTCAAACAGTGATGGGAAAGCGAGCGCCAGCGCAGAAATTGTCGATTATTTGTTA
CTGCAAATTTTTAATAAATATGAGCCGATTCTCGATCATTTAAGGCATATTCCTGAATTACCGCCTATTACGCTTTATCA
GGAATTGGCTAAGTTCTCGGGGGAATTATCTACCTTTATCCGGACCAAAACCCGCCGACCCCGCCCGGCACCTGGCTATG
ATCATGCGAAGCTCTATGCGTCTATTCGTCCGTTGGTTGACGAAGTTCATGAACTACTGAACCAGATCTTGGTGCGTGCT
GGGCAGATGATACCGCTGGAGACGAAAGGCAATGGCGTTTGGTCTGCCTCCGTACTGCCTAATGAATTACGCTCGTTTTC
AAATCTGGTCCTTGCCGTTCATGCGCAATTACCGATGGATGTGCTACAGCATCAATTTTCAGTACAAACAAAAATCAGCG
CACCTCAGCAATTGCATGAACTGGTGCGATCGCATTTGCCAGGGTTGGAACTACAGCGTTTGCCGGTACCGCCCAGACAA
ATTCCGTATAGCGCAGGGTACGTTTATTTTGAATTGATAAAAAATGGCCCCTTCTGGGACAAAGTTTCCAATGCTGGTGC
CATTGCCCTGCATGTGGCGGGTGATTTCCCTGCCTTGAAAATGGAGCTCTGGGGGATTAGAGATTCATGA