Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | ABFB52_RS16050 | Genome accession | NZ_CP155585 |
| Coordinates | 3586577..3587686 (-) | Length | 369 a.a. |
| NCBI ID | WP_085745512.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. 9.2(2024) | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3581577..3592686
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABFB52_RS16035 (ABFB52_16035) | - | 3582379..3583770 (+) | 1392 | WP_007952055.1 | GntP family permease | - |
| ABFB52_RS16040 (ABFB52_16040) | hbdH | 3583778..3584551 (+) | 774 | WP_102718109.1 | 3-hydroxybutyrate dehydrogenase | - |
| ABFB52_RS16045 (ABFB52_16045) | - | 3584615..3586570 (+) | 1956 | WP_129973271.1 | acetoacetate--CoA ligase | - |
| ABFB52_RS16050 (ABFB52_16050) | pilU | 3586577..3587686 (-) | 1110 | WP_085745512.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| ABFB52_RS16055 (ABFB52_16055) | - | 3587812..3590349 (+) | 2538 | WP_129973272.1 | PAS domain-containing sensor histidine kinase | - |
| ABFB52_RS16060 (ABFB52_16060) | - | 3590400..3590675 (+) | 276 | WP_007952044.1 | peptidylprolyl isomerase | - |
| ABFB52_RS16065 (ABFB52_16065) | - | 3590725..3591660 (-) | 936 | WP_129973273.1 | sugar kinase | - |
Sequence
Protein
Download Length: 369 a.a. Molecular weight: 41099.05 Da Isoelectric Point: 6.8357
>NTDB_id=997956 ABFB52_RS16050 WP_085745512.1 3586577..3587686(-) (pilU) [Pseudomonas sp. 9.2(2024)]
MEIDALLKQLASRHGSDLFLSTGAPPSARFDGVLTPLSEQPFKPGEVASIAVSLMDAEQRREFDRDLEMNLAISRTGIGR
FRVNIFKQRNDVSIVIRNVKLDIPRFEDLKLPPVLLDSVMLKQGLILFVGATDSGKSTSLAALIDHRNRHSSGHIITIED
PVEYIHRHKKSIINQREVGVDTRSFHAALKNTLRQAPDVVLIGEIRDRETMEHALAFAETGHLVLSTLHANNANQALDRI
INFFPEERRPQLLHALGNHLKAFVSQRLVRTRDGQRRAAAEVMLGTPTIADLIRRNDFGELKTIMEKSAELGMQTFDGAL
FALVAEGVIDEDEALKNADSVNNLRLRLKLHADTMPSPPPSTGEWGLMD
MEIDALLKQLASRHGSDLFLSTGAPPSARFDGVLTPLSEQPFKPGEVASIAVSLMDAEQRREFDRDLEMNLAISRTGIGR
FRVNIFKQRNDVSIVIRNVKLDIPRFEDLKLPPVLLDSVMLKQGLILFVGATDSGKSTSLAALIDHRNRHSSGHIITIED
PVEYIHRHKKSIINQREVGVDTRSFHAALKNTLRQAPDVVLIGEIRDRETMEHALAFAETGHLVLSTLHANNANQALDRI
INFFPEERRPQLLHALGNHLKAFVSQRLVRTRDGQRRAAAEVMLGTPTIADLIRRNDFGELKTIMEKSAELGMQTFDGAL
FALVAEGVIDEDEALKNADSVNNLRLRLKLHADTMPSPPPSTGEWGLMD
Nucleotide
Download Length: 1110 bp
>NTDB_id=997956 ABFB52_RS16050 WP_085745512.1 3586577..3587686(-) (pilU) [Pseudomonas sp. 9.2(2024)]
ATGGAAATCGATGCATTGCTCAAACAACTGGCGAGCCGCCACGGTTCGGATCTGTTCCTGTCCACGGGCGCACCACCCAG
TGCGCGGTTCGACGGGGTGCTCACGCCCTTGAGCGAGCAGCCCTTCAAACCCGGTGAGGTGGCCAGTATCGCGGTCTCCC
TGATGGACGCCGAACAACGACGGGAGTTCGACCGGGATCTGGAAATGAACCTGGCGATTTCCCGCACCGGGATCGGCCGC
TTCCGGGTCAACATCTTCAAACAACGCAATGACGTGTCGATCGTTATTCGTAACGTCAAACTCGACATTCCGCGATTCGA
AGATTTGAAACTGCCGCCGGTATTGCTCGATTCGGTGATGCTCAAGCAAGGCCTGATCCTGTTCGTCGGCGCCACCGACT
CGGGCAAGTCGACGTCGCTGGCGGCGCTGATCGACCATCGCAATCGCCACAGCAGCGGGCACATCATCACCATTGAAGAC
CCGGTGGAATACATCCATCGCCACAAAAAATCAATCATCAACCAGCGCGAAGTCGGGGTCGATACCCGCAGCTTTCACGC
TGCGCTGAAAAATACTCTGCGCCAGGCCCCGGACGTGGTGCTGATCGGCGAAATCCGTGATCGCGAGACCATGGAACATG
CGCTGGCCTTCGCCGAAACCGGGCATCTGGTGCTGTCGACATTGCACGCCAACAACGCCAATCAGGCGCTGGACCGGATC
ATCAATTTCTTTCCCGAAGAGCGCCGCCCGCAATTGCTGCATGCCTTGGGCAATCACCTCAAGGCGTTCGTCTCCCAGCG
TCTGGTGCGAACCCGGGACGGTCAGCGACGGGCCGCCGCCGAGGTGATGCTGGGCACGCCGACGATTGCCGACCTGATCC
GGCGCAATGATTTTGGTGAGCTGAAAACCATCATGGAAAAATCGGCGGAACTGGGCATGCAGACCTTTGACGGTGCACTG
TTCGCGCTGGTAGCAGAAGGGGTGATCGATGAAGACGAGGCCCTGAAAAATGCTGATTCGGTGAATAACCTGCGCCTGCG
TCTGAAGCTGCACGCCGACACCATGCCGTCCCCACCGCCCTCGACCGGCGAGTGGGGACTGATGGACTGA
ATGGAAATCGATGCATTGCTCAAACAACTGGCGAGCCGCCACGGTTCGGATCTGTTCCTGTCCACGGGCGCACCACCCAG
TGCGCGGTTCGACGGGGTGCTCACGCCCTTGAGCGAGCAGCCCTTCAAACCCGGTGAGGTGGCCAGTATCGCGGTCTCCC
TGATGGACGCCGAACAACGACGGGAGTTCGACCGGGATCTGGAAATGAACCTGGCGATTTCCCGCACCGGGATCGGCCGC
TTCCGGGTCAACATCTTCAAACAACGCAATGACGTGTCGATCGTTATTCGTAACGTCAAACTCGACATTCCGCGATTCGA
AGATTTGAAACTGCCGCCGGTATTGCTCGATTCGGTGATGCTCAAGCAAGGCCTGATCCTGTTCGTCGGCGCCACCGACT
CGGGCAAGTCGACGTCGCTGGCGGCGCTGATCGACCATCGCAATCGCCACAGCAGCGGGCACATCATCACCATTGAAGAC
CCGGTGGAATACATCCATCGCCACAAAAAATCAATCATCAACCAGCGCGAAGTCGGGGTCGATACCCGCAGCTTTCACGC
TGCGCTGAAAAATACTCTGCGCCAGGCCCCGGACGTGGTGCTGATCGGCGAAATCCGTGATCGCGAGACCATGGAACATG
CGCTGGCCTTCGCCGAAACCGGGCATCTGGTGCTGTCGACATTGCACGCCAACAACGCCAATCAGGCGCTGGACCGGATC
ATCAATTTCTTTCCCGAAGAGCGCCGCCCGCAATTGCTGCATGCCTTGGGCAATCACCTCAAGGCGTTCGTCTCCCAGCG
TCTGGTGCGAACCCGGGACGGTCAGCGACGGGCCGCCGCCGAGGTGATGCTGGGCACGCCGACGATTGCCGACCTGATCC
GGCGCAATGATTTTGGTGAGCTGAAAACCATCATGGAAAAATCGGCGGAACTGGGCATGCAGACCTTTGACGGTGCACTG
TTCGCGCTGGTAGCAGAAGGGGTGATCGATGAAGACGAGGCCCTGAAAAATGCTGATTCGGTGAATAACCTGCGCCTGCG
TCTGAAGCTGCACGCCGACACCATGCCGTCCCCACCGCCCTCGACCGGCGAGTGGGGACTGATGGACTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
56.338 |
96.206 |
0.542 |
| pilU | Acinetobacter baylyi ADP1 |
53.693 |
95.393 |
0.512 |
| pilU | Vibrio cholerae strain A1552 |
50.571 |
94.851 |
0.48 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
41.141 |
90.244 |
0.371 |
| pilT | Vibrio cholerae strain A1552 |
41.141 |
90.244 |
0.371 |
| pilT | Pseudomonas stutzeri DSM 10701 |
39.535 |
93.225 |
0.369 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
40.118 |
91.87 |
0.369 |
| pilT | Pseudomonas aeruginosa PAK |
39.244 |
93.225 |
0.366 |
| pilT | Legionella pneumophila strain ERS1305867 |
40.12 |
90.515 |
0.363 |
| pilT | Legionella pneumophila strain Lp02 |
40.12 |
90.515 |
0.363 |
| pilT | Acinetobacter baumannii D1279779 |
39.82 |
90.515 |
0.36 |
| pilT | Acinetobacter baumannii strain A118 |
39.82 |
90.515 |
0.36 |