Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | QMG46_RS08260 | Genome accession | NZ_AP027042 |
| Coordinates | 1855635..1856750 (-) | Length | 371 a.a. |
| NCBI ID | WP_281852021.1 | Uniprot ID | - |
| Organism | Dyella sp. GSA-30 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1850635..1861750
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QMG46_RS08240 (DYGSA30_16320) | tkt | 1850792..1852801 (+) | 2010 | WP_281852019.1 | transketolase | - |
| QMG46_RS08245 (DYGSA30_16330) | - | 1852935..1853570 (-) | 636 | WP_281852840.1 | HAD hydrolase-like protein | - |
| QMG46_RS08250 (DYGSA30_16340) | - | 1853582..1854760 (-) | 1179 | WP_281852020.1 | phosphoglycerate kinase | - |
| QMG46_RS08255 (DYGSA30_16350) | maiA | 1854899..1855558 (+) | 660 | WP_281852842.1 | maleylacetoacetate isomerase | - |
| QMG46_RS08260 (DYGSA30_16360) | pilU | 1855635..1856750 (-) | 1116 | WP_281852021.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| QMG46_RS08265 (DYGSA30_16370) | - | 1857029..1857628 (+) | 600 | WP_281852022.1 | DUF4398 domain-containing protein | - |
| QMG46_RS08270 (DYGSA30_16380) | - | 1857625..1858233 (+) | 609 | WP_281852023.1 | hypothetical protein | - |
| QMG46_RS08275 (DYGSA30_16390) | - | 1858640..1858864 (+) | 225 | WP_281852024.1 | YdcH family protein | - |
| QMG46_RS08280 (DYGSA30_16400) | - | 1859016..1860386 (+) | 1371 | WP_281852025.1 | pyridoxal-phosphate dependent enzyme | - |
Sequence
Protein
Download Length: 371 a.a. Molecular weight: 41265.50 Da Isoelectric Point: 6.4241
>NTDB_id=99245 QMG46_RS08260 WP_281852021.1 1855635..1856750(-) (pilU) [Dyella sp. GSA-30]
MDIGYFLKLMVDKGASDMFLTTGAPVNIKVEGKLYPLGNTGLPSGMVKKIAYSLMDEGQVPQFERDLELNMALAVKEAGR
FRINVFKQRGEVGMVIRAIKSEIPSIDQLQLPGIFRDLIMEPRGLILVVGATGSGKSTTLAAMIDQRNQNSSGHILTIED
PIEYLHRHKRSIVNQREVGLDTHSYHEALKNAMREAPDVIMIGEIRDTDTMEAAIAFSETGHLCLATLHSNNADQTLERI
LNFFPESAHKNVLMNLALNLRAVISQRLVLGKDGRRIPATEVLLNTPLIRDMIRRGQIHEVKEAMDRSLQEGMQTFDQSL
YRLYKEGRIELEEALNKADSRDGLALKVRLSEGGGVNNTELVGNDPYGLGF
MDIGYFLKLMVDKGASDMFLTTGAPVNIKVEGKLYPLGNTGLPSGMVKKIAYSLMDEGQVPQFERDLELNMALAVKEAGR
FRINVFKQRGEVGMVIRAIKSEIPSIDQLQLPGIFRDLIMEPRGLILVVGATGSGKSTTLAAMIDQRNQNSSGHILTIED
PIEYLHRHKRSIVNQREVGLDTHSYHEALKNAMREAPDVIMIGEIRDTDTMEAAIAFSETGHLCLATLHSNNADQTLERI
LNFFPESAHKNVLMNLALNLRAVISQRLVLGKDGRRIPATEVLLNTPLIRDMIRRGQIHEVKEAMDRSLQEGMQTFDQSL
YRLYKEGRIELEEALNKADSRDGLALKVRLSEGGGVNNTELVGNDPYGLGF
Nucleotide
Download Length: 1116 bp
>NTDB_id=99245 QMG46_RS08260 WP_281852021.1 1855635..1856750(-) (pilU) [Dyella sp. GSA-30]
GTGGATATCGGTTATTTCCTGAAGCTGATGGTGGACAAGGGCGCGTCGGACATGTTCCTGACGACTGGCGCCCCGGTGAA
CATCAAGGTCGAAGGCAAGCTCTACCCGCTAGGCAACACCGGGCTACCCAGCGGCATGGTCAAGAAGATCGCCTATTCGC
TGATGGACGAAGGTCAGGTACCGCAGTTCGAGCGCGATCTCGAGCTGAATATGGCCCTGGCCGTGAAGGAGGCGGGACGC
TTCCGTATCAACGTGTTCAAGCAGCGCGGCGAAGTGGGCATGGTGATCCGCGCCATCAAGAGCGAGATCCCCAGCATCGA
CCAGTTGCAGCTACCCGGCATCTTCCGCGACCTGATCATGGAACCGCGCGGGCTGATCCTGGTCGTCGGCGCCACCGGCT
CGGGCAAGTCGACCACCCTGGCGGCGATGATCGATCAGCGCAACCAGAACTCGTCGGGCCATATCCTGACCATCGAAGAC
CCGATCGAGTACCTGCACCGCCACAAGCGCTCGATCGTCAACCAGCGCGAAGTCGGCCTGGACACGCACAGCTATCACGA
GGCGCTGAAAAACGCGATGCGTGAGGCGCCGGACGTGATCATGATCGGCGAGATTCGCGACACCGACACCATGGAAGCGG
CCATCGCGTTCTCCGAAACCGGCCATCTCTGCCTGGCGACGCTGCATTCGAACAACGCAGACCAGACGCTGGAGCGTATC
CTCAATTTCTTCCCGGAATCGGCGCACAAGAACGTGCTGATGAACCTTGCGCTCAATCTGCGCGCGGTGATCAGCCAACG
CCTGGTGCTGGGCAAGGACGGCCGCCGCATCCCGGCAACCGAAGTCCTGCTCAATACGCCGCTGATCCGCGACATGATCC
GCCGCGGCCAGATTCACGAAGTCAAGGAAGCGATGGATCGCAGCCTGCAGGAAGGCATGCAGACCTTCGATCAATCGCTG
TATCGCCTTTACAAGGAAGGCCGCATCGAACTGGAAGAGGCGCTCAACAAGGCCGATTCGCGCGACGGCCTGGCGTTGAA
GGTGCGTTTGTCCGAAGGCGGCGGTGTGAACAACACCGAGCTGGTGGGCAATGATCCGTATGGGTTGGGGTTCTGA
GTGGATATCGGTTATTTCCTGAAGCTGATGGTGGACAAGGGCGCGTCGGACATGTTCCTGACGACTGGCGCCCCGGTGAA
CATCAAGGTCGAAGGCAAGCTCTACCCGCTAGGCAACACCGGGCTACCCAGCGGCATGGTCAAGAAGATCGCCTATTCGC
TGATGGACGAAGGTCAGGTACCGCAGTTCGAGCGCGATCTCGAGCTGAATATGGCCCTGGCCGTGAAGGAGGCGGGACGC
TTCCGTATCAACGTGTTCAAGCAGCGCGGCGAAGTGGGCATGGTGATCCGCGCCATCAAGAGCGAGATCCCCAGCATCGA
CCAGTTGCAGCTACCCGGCATCTTCCGCGACCTGATCATGGAACCGCGCGGGCTGATCCTGGTCGTCGGCGCCACCGGCT
CGGGCAAGTCGACCACCCTGGCGGCGATGATCGATCAGCGCAACCAGAACTCGTCGGGCCATATCCTGACCATCGAAGAC
CCGATCGAGTACCTGCACCGCCACAAGCGCTCGATCGTCAACCAGCGCGAAGTCGGCCTGGACACGCACAGCTATCACGA
GGCGCTGAAAAACGCGATGCGTGAGGCGCCGGACGTGATCATGATCGGCGAGATTCGCGACACCGACACCATGGAAGCGG
CCATCGCGTTCTCCGAAACCGGCCATCTCTGCCTGGCGACGCTGCATTCGAACAACGCAGACCAGACGCTGGAGCGTATC
CTCAATTTCTTCCCGGAATCGGCGCACAAGAACGTGCTGATGAACCTTGCGCTCAATCTGCGCGCGGTGATCAGCCAACG
CCTGGTGCTGGGCAAGGACGGCCGCCGCATCCCGGCAACCGAAGTCCTGCTCAATACGCCGCTGATCCGCGACATGATCC
GCCGCGGCCAGATTCACGAAGTCAAGGAAGCGATGGATCGCAGCCTGCAGGAAGGCATGCAGACCTTCGATCAATCGCTG
TATCGCCTTTACAAGGAAGGCCGCATCGAACTGGAAGAGGCGCTCAACAAGGCCGATTCGCGCGACGGCCTGGCGTTGAA
GGTGCGTTTGTCCGAAGGCGGCGGTGTGAACAACACCGAGCTGGTGGGCAATGATCCGTATGGGTTGGGGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
52.101 |
96.226 |
0.501 |
| pilU | Vibrio cholerae strain A1552 |
48.787 |
100 |
0.488 |
| pilU | Acinetobacter baylyi ADP1 |
50.565 |
95.418 |
0.482 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
44.543 |
91.375 |
0.407 |
| pilT | Acinetobacter baylyi ADP1 |
41.471 |
91.644 |
0.38 |
| pilT | Legionella pneumophila strain Lp02 |
40.936 |
92.183 |
0.377 |
| pilT | Legionella pneumophila strain ERS1305867 |
40.936 |
92.183 |
0.377 |
| pilT | Acinetobacter baumannii strain A118 |
41.124 |
91.105 |
0.375 |
| pilT | Acinetobacter nosocomialis M2 |
41.124 |
91.105 |
0.375 |
| pilT | Acinetobacter baumannii D1279779 |
41.124 |
91.105 |
0.375 |
| pilT | Pseudomonas aeruginosa PAK |
40.828 |
91.105 |
0.372 |
| pilT | Pseudomonas stutzeri DSM 10701 |
40.533 |
91.105 |
0.369 |