Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA/cglA/cilD   Type   Machinery gene
Locus tag   R8624_RS09455 Genome accession   NZ_AP026930
Coordinates   1827143..1828084 (-) Length   313 a.a.
NCBI ID   WP_000249571.1    Uniprot ID   A0A0B7M3Q7
Organism   Streptococcus pneumoniae strain PZ900701208     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1822143..1833084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8624_RS09415 (PC1195_18290) comYH 1822630..1823583 (-) 954 WP_050311715.1 class I SAM-dependent methyltransferase Machinery gene
  R8624_RS09420 - 1823644..1824238 (-) 595 Protein_1832 class I SAM-dependent methyltransferase -
  R8624_RS09425 (PC1195_18320) comGG/cglG 1824341..1824787 (-) 447 WP_050311716.1 competence type IV pilus minor pilin ComGG Machinery gene
  R8624_RS09430 (PC1195_18330) comGF/cglF 1824765..1825226 (-) 462 WP_050120523.1 competence type IV pilus minor pilin ComGF Machinery gene
  R8624_RS09435 (PC1195_18340) comGE/cglE 1825189..1825491 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  R8624_RS09440 (PC1195_18350) comGD/cglD 1825454..1825858 (-) 405 WP_050311717.1 competence type IV pilus minor pilin ComGD Machinery gene
  R8624_RS09445 (PC1195_18360) comGC/cglC 1825851..1826177 (-) 327 WP_000738626.1 comG operon protein ComGC Machinery gene
  R8624_RS09450 (PC1195_18370) comGB/cglB 1826179..1827195 (-) 1017 WP_074017570.1 competence type IV pilus assembly protein ComGB Machinery gene
  R8624_RS09455 (PC1195_18380) comGA/cglA/cilD 1827143..1828084 (-) 942 WP_000249571.1 competence type IV pilus ATPase ComGA Machinery gene
  R8624_RS09460 (PC1195_18390) - 1828160..1828525 (-) 366 WP_000286415.1 DUF1033 family protein -
  R8624_RS09465 (PC1195_18400) - 1828676..1829734 (-) 1059 WP_000649468.1 zinc-dependent alcohol dehydrogenase family protein -
  R8624_RS09470 (PC1195_18410) nagA 1829897..1831048 (-) 1152 WP_001134457.1 N-acetylglucosamine-6-phosphate deacetylase -
  R8624_RS09475 (PC1195_18420) - 1831201..1833018 (-) 1818 WP_044788681.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 35591.51 Da        Isoelectric Point: 6.0083

>NTDB_id=98779 R8624_RS09455 WP_000249571.1 1827143..1828084(-) (comGA/cglA/cilD) [Streptococcus pneumoniae strain PZ900701208]
MVQEIAQEIIRSARKKGTQDIYFVPKLDAYELHMRVGDERCKIGSYDFEKFAAVISHFKFVAGMNVGEKRRSQLGSCDYA
YDQKMASLRLSTVGDYRGHESLVIRLLHDEEQDLHFWFQDIEELGKQYRQRGLYLFAGPVGSGKTTLMHELSKSLFKGQQ
VMSIEDPVEIKQDDMLQLQLNEAIGLTYENLIKLSLRHRPDLLIIGEIRDSETARAVVRASLTGATVFSTIHAKSIRGVY
ERLLELGVSEEELAVVLQGVCYQRLIGGGGIVDFANRDYQEHQAAKWNEQIDQLLKDGHITSLQAETEKISYS

Nucleotide


Download         Length: 942 bp        

>NTDB_id=98779 R8624_RS09455 WP_000249571.1 1827143..1828084(-) (comGA/cglA/cilD) [Streptococcus pneumoniae strain PZ900701208]
ATGGTTCAAGAAATTGCACAAGAAATCATTCGTTCAGCTCGGAAAAAAGGGACGCAGGATATTTATTTTGTCCCTAAGTT
AGACGCCTATGAGCTTCATATGAGGGTAGGAGACGAGCGCTGTAAAATTGGTAGCTATGATTTTGAAAAGTTTGCAGCCG
TTATCAGTCACTTTAAGTTTGTGGCGGGTATGAATGTGGGAGAAAAAAGACGTAGTCAACTGGGTTCCTGTGATTATGCC
TATGACCAGAAGATGGCGTCTCTACGTTTATCTACTGTAGGCGATTATCGGGGGCATGAGAGTTTGGTTATCCGTTTGTT
GCACGATGAGGAGCAGGACTTGCATTTTTGGTTTCAGGATATTGAAGAATTAGGCAAGCAGTACAGGCAACGGGGACTCT
ATCTTTTTGCTGGCCCGGTTGGGAGTGGTAAGACGACCTTGATGCATGAATTGTCCAAGTCACTCTTTAAAGGACAGCAA
GTTATGTCCATCGAAGATCCTGTCGAAATCAAGCAGGACGACATGCTTCAGTTGCAGTTGAACGAAGCAATCGGCCTAAC
CTATGAAAATCTAATCAAACTTTCCTTGCGTCATCGACCAGATCTCTTGATTATCGGAGAAATTCGTGACAGCGAGACGG
CGCGTGCAGTGGTCAGAGCTAGTTTGACAGGTGCGACAGTCTTTTCAACCATTCACGCCAAGAGTATCCGAGGTGTTTAT
GAGCGTCTGCTGGAGTTGGGTGTGAGTGAAGAAGAATTGGCAGTTGTTCTGCAAGGAGTCTGCTACCAGAGATTAATCGG
GGGAGGAGGAATCGTTGACTTTGCAAACAGAGATTATCAAGAACACCAAGCAGCCAAGTGGAATGAGCAAATTGACCAGC
TTCTTAAAGATGGACATATCACAAGTCTTCAGGCTGAGACGGAAAAAATTAGCTACAGCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B7M3Q7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

99.042

100

0.99
  comGA/cglA/cilD Streptococcus pneumoniae D39

99.042

100

0.99
  comGA/cglA/cilD Streptococcus pneumoniae R6

99.042

100

0.99
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

99.042

100

0.99
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

96.805

100

0.968
  comYA Streptococcus gordonii str. Challis substr. CH1

77.742

99.042

0.77
  comYA Streptococcus mutans UA159

65.916

99.361

0.655
  comYA Streptococcus mutans UA140

65.916

99.361

0.655
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

62.581

99.042

0.62
  comGA Lactococcus lactis subsp. cremoris KW2

54.808

99.681

0.546
  comGA Latilactobacillus sakei subsp. sakei 23K

42.642

84.665

0.361

Multiple sequence alignment