Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   R8624_RS09415 Genome accession   NZ_AP026930
Coordinates   1822630..1823583 (-) Length   317 a.a.
NCBI ID   WP_050311715.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900701208     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1817630..1828583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8624_RS09385 (PC1195_18240) - 1818391..1819014 (-) 624 WP_050258902.1 hypothetical protein -
  R8624_RS09390 (PC1195_18250) jag 1819065..1820051 (-) 987 WP_050258901.1 RNA-binding cell elongation regulator Jag/EloR -
  R8624_RS09395 (PC1195_18260) - 1820070..1820894 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  R8624_RS09400 (PC1195_18270) rnpA 1820869..1821240 (-) 372 WP_000739246.1 ribonuclease P protein component -
  R8624_RS09405 - 1821257..1821388 (-) 132 WP_000768904.1 hypothetical protein -
  R8624_RS09410 (PC1195_18280) - 1821389..1822579 (-) 1191 WP_000167766.1 acetate kinase -
  R8624_RS09415 (PC1195_18290) comYH 1822630..1823583 (-) 954 WP_050311715.1 class I SAM-dependent methyltransferase Machinery gene
  R8624_RS09420 - 1823644..1824238 (-) 595 Protein_1832 class I SAM-dependent methyltransferase -
  R8624_RS09425 (PC1195_18320) comGG/cglG 1824341..1824787 (-) 447 WP_050311716.1 competence type IV pilus minor pilin ComGG Machinery gene
  R8624_RS09430 (PC1195_18330) comGF/cglF 1824765..1825226 (-) 462 WP_050120523.1 competence type IV pilus minor pilin ComGF Machinery gene
  R8624_RS09435 (PC1195_18340) comGE/cglE 1825189..1825491 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  R8624_RS09440 (PC1195_18350) comGD/cglD 1825454..1825858 (-) 405 WP_050311717.1 competence type IV pilus minor pilin ComGD Machinery gene
  R8624_RS09445 (PC1195_18360) comGC/cglC 1825851..1826177 (-) 327 WP_000738626.1 comG operon protein ComGC Machinery gene
  R8624_RS09450 (PC1195_18370) comGB/cglB 1826179..1827195 (-) 1017 WP_074017570.1 competence type IV pilus assembly protein ComGB Machinery gene
  R8624_RS09455 (PC1195_18380) comGA/cglA/cilD 1827143..1828084 (-) 942 WP_000249571.1 competence type IV pilus ATPase ComGA Machinery gene
  R8624_RS09460 (PC1195_18390) - 1828160..1828525 (-) 366 WP_000286415.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35715.94 Da        Isoelectric Point: 4.2706

>NTDB_id=98772 R8624_RS09415 WP_050311715.1 1822630..1823583(-) (comYH) [Streptococcus pneumoniae strain PZ900701208]
MDFEKIEQAYTYLLENVQVIQSDLATNFYDALVEQNSIYLDGETELEQVKDNNQTLKRLALRKEEWLKTYQFLLMKAGQT
EPLQANHQFTPDAIALLLVFIVEELFKEEEITILEMGSGMGILGATFLTSLTKKVDYLGMEVDDLLIDLAASMADVIGLQ
AGFVQGDAVRPQMLKESDVVISDLPVGYYPDDAVASRHQVASSQEHTYAHHLLMEQGLKYLKSDGYAIFLAPSDLLTSPQ
SDLLKVWLKEEASLVAMISLPENLFANAKQSKTIFILQKKNEIAVEPFVYPLASLQDASVLMKFKENFQKWTQGTEI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=98772 R8624_RS09415 WP_050311715.1 1822630..1823583(-) (comYH) [Streptococcus pneumoniae strain PZ900701208]
ATGGATTTTGAAAAAATTGAACAAGCTTATACCTATTTACTAGAGAATGTCCAAGTCATCCAAAGTGATTTGGCGACCAA
CTTTTATGACGCCTTGGTGGAGCAAAACAGCATCTATCTGGATGGTGAGACTGAGCTAGAACAGGTCAAAGACAACAATC
AGACCCTTAAGCGTTTAGCACTACGCAAAGAAGAATGGCTCAAGACCTACCAGTTTCTCTTGATGAAGGCTGGGCAAACA
GAACCCTTGCAGGCCAATCACCAGTTTACACCGGATGCTATTGCTTTACTTTTGGTGTTTATTGTGGAAGAGCTGTTTAA
AGAGGAGGAAATTACTATCCTCGAAATGGGTTCTGGGATGGGAATTTTGGGCGCTACTTTCTTGACCTCGCTTACTAAAA
AGGTGGATTATTTGGGAATGGAAGTGGATGATTTGCTGATTGATTTGGCAGCTAGCATGGCAGATGTAATTGGTTTGCAG
GCTGGCTTTGTCCAAGGAGATGCCGTTCGTCCACAAATGCTCAAAGAAAGCGATGTGGTCATCAGTGACTTGCCTGTCGG
CTATTATCCTGATGATGCCGTTGCGTCGCGTCATCAAGTTGCTTCTAGCCAAGAACATACTTACGCCCATCACTTGCTCA
TGGAACAAGGGCTTAAGTACCTCAAGTCAGATGGATATGCTATTTTTCTAGCTCCGAGTGATTTGTTGACCAGTCCTCAA
AGTGATTTGTTGAAAGTCTGGTTGAAAGAGGAGGCAAGTCTGGTTGCTATGATTAGTTTACCTGAAAATCTCTTTGCTAA
TGCCAAACAATCTAAGACTATTTTTATCTTACAGAAGAAAAATGAAATAGCAGTAGAGCCTTTTGTTTATCCACTTGCTA
GCTTGCAAGATGCAAGTGTTTTAATGAAATTTAAAGAAAATTTTCAAAAATGGACTCAAGGTACTGAAATATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

54.633

98.738

0.539
  comYH Streptococcus mutans UA159

54.313

98.738

0.536

Multiple sequence alignment