Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ACAK38_RS03095 Genome accession   NZ_AP031583
Coordinates   635025..635387 (+) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain JUNP514     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 630025..640387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAK38_RS03080 (JUNP514_0613) - 632519..633637 (-) 1119 WP_001260821.1 efflux RND transporter periplasmic adaptor subunit -
  ACAK38_RS03085 (JUNP514_0614) - 633697..634335 (-) 639 WP_004739833.1 hypothetical protein -
  ACAK38_RS03090 (JUNP514_0615) pilG 634618..635001 (+) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  ACAK38_RS03095 (JUNP514_0616) pilH 635025..635387 (+) 363 WP_000101096.1 PleD family two-component system response regulator Machinery gene
  ACAK38_RS03100 - 635448..635984 (+) 537 WP_045543731.1 chemotaxis protein CheW -
  ACAK38_RS03105 (JUNP514_0617) - 636031..638109 (+) 2079 WP_045543732.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=98770 ACAK38_RS03095 WP_000101096.1 635025..635387(+) (pilH) [Acinetobacter baumannii strain JUNP514]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=98770 ACAK38_RS03095 WP_000101096.1 635025..635387(+) (pilH) [Acinetobacter baumannii strain JUNP514]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCGGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392

Multiple sequence alignment