Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   R9C51_RS09415 Genome accession   NZ_AP026921
Coordinates   1822991..1823386 (-) Length   131 a.a.
NCBI ID   WP_000282467.1    Uniprot ID   A0A098Z0L0
Organism   Streptococcus pneumoniae strain PZ900700027     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1820913..1845776 1822991..1823386 within 0


Gene organization within MGE regions


Location: 1820913..1845776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9C51_RS09405 (PC0027_18500) groL 1820913..1822535 (-) 1623 WP_000031568.1 chaperonin GroEL -
  R9C51_RS09410 (PC0027_18510) groES 1822551..1822835 (-) 285 WP_000917330.1 co-chaperone GroES -
  R9C51_RS09415 (PC0027_18520) ssbB/cilA 1822991..1823386 (-) 396 WP_000282467.1 single-stranded DNA-binding protein Machinery gene
  R9C51_RS09420 (PC0027_18530) - 1823464..1824225 (-) 762 WP_057485735.1 SDR family NAD(P)-dependent oxidoreductase -
  R9C51_RS09425 (PC0027_18540) ytpR 1824258..1824884 (-) 627 WP_000578320.1 YtpR family tRNA-binding protein -
  R9C51_RS09430 (PC0027_18550) - 1824900..1825217 (-) 318 WP_000615767.1 thioredoxin family protein -
  R9C51_RS09435 (PC0027_18560) - 1825214..1825513 (-) 300 WP_001013974.1 DUF4651 domain-containing protein -
  R9C51_RS09440 - 1825711..1825773 (-) 63 WP_219300018.1 hypothetical protein -
  R9C51_RS09445 (PC0027_18570) - 1825798..1825989 (-) 192 WP_000291825.1 cell wall-binding protein -
  R9C51_RS09450 (PC0027_18580) - 1826150..1826824 (-) 675 WP_000725751.1 LiaF transmembrane domain-containing protein -
  R9C51_RS09455 (PC0027_18590) - 1826830..1827276 (-) 447 WP_000776594.1 LytTR family DNA-binding domain-containing protein -
  R9C51_RS09460 - 1827390..1827893 (-) 504 WP_000800928.1 phosphatase PAP2 family protein -
  R9C51_RS09465 (PC0027_18600) - 1827890..1828252 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -
  R9C51_RS09470 (PC0027_18610) - 1828318..1829163 (-) 846 Protein_1859 ATP-binding cassette domain-containing protein -
  R9C51_RS09475 (PC0027_18620) rcrP 1829356..1830177 (-) 822 WP_000601682.1 ABC transporter permease Regulator
  R9C51_RS09480 (PC0027_18630) - 1830194..1830665 (-) 472 Protein_1861 MarR family winged helix-turn-helix transcriptional regulator -
  R9C51_RS09485 (PC0027_18640) - 1830789..1831505 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  R9C51_RS09490 (PC0027_18650) ply 1832388..1833797 (-) 1410 WP_001284356.1 cholesterol-dependent cytolysin pneumolysin -
  R9C51_RS09495 (PC0027_18660) - 1833808..1834218 (-) 411 WP_000595762.1 hypothetical protein -
  R9C51_RS09500 (PC0027_18670) - 1834211..1834819 (-) 609 WP_000083614.1 hypothetical protein -
  R9C51_RS09505 (PC0027_18680) - 1834832..1835290 (-) 459 WP_000186955.1 DUF4231 domain-containing protein -
  R9C51_RS09510 (PC0027_18700) - 1835415..1835814 (+) 400 Protein_1867 transposase family protein -
  R9C51_RS09515 (PC0027_18710) - 1836579..1836839 (-) 261 WP_001209207.1 hypothetical protein -
  R9C51_RS09520 - 1836898..1837449 (-) 552 Protein_1869 hypothetical protein -
  R9C51_RS09525 (PC0027_18740) - 1837439..1837636 (-) 198 WP_000890144.1 hypothetical protein -
  R9C51_RS09530 (PC0027_18750) - 1837640..1838224 (-) 585 WP_023396456.1 hypothetical protein -
  R9C51_RS09535 (PC0027_18760) - 1838632..1839057 (-) 426 WP_050232770.1 hypothetical protein -
  R9C51_RS09540 (PC0027_18770) - 1839188..1839544 (-) 357 Protein_1873 ImmA/IrrE family metallo-endopeptidase -
  R9C51_RS09545 (PC0027_18780) - 1839590..1839796 (-) 207 WP_000366087.1 hypothetical protein -
  R9C51_RS09550 (PC0027_18790) - 1839783..1839944 (-) 162 WP_001055999.1 helix-turn-helix domain-containing protein -
  R9C51_RS09555 (PC0027_18800) lytA 1840290..1841246 (-) 957 WP_050232567.1 N-acetylmuramoyl-L-alanine amidase LytA -
  R9C51_RS09560 (PC0027_18810) - 1841622..1842992 (-) 1371 WP_001036271.1 MATE family efflux transporter -
  R9C51_RS09565 (PC0027_18820) recA 1843299..1844465 (-) 1167 WP_001085462.1 recombinase RecA Machinery gene
  R9C51_RS09570 (PC0027_18830) cinA 1844520..1845776 (-) 1257 WP_000642704.1 competence/damage-inducible protein A Machinery gene

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14925.89 Da        Isoelectric Point: 5.9409

>NTDB_id=98050 R9C51_RS09415 WP_000282467.1 1822991..1823386(-) (ssbB/cilA) [Streptococcus pneumoniae strain PZ900700027]
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=98050 R9C51_RS09415 WP_000282467.1 1822991..1823386(-) (ssbB/cilA) [Streptococcus pneumoniae strain PZ900700027]
ATGTATAATAAAGTTATCATGATTGGGCGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCGGTAGC
GCGAGCAACTATCGCTGTGAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTCAATATGGTCCTAT
GGGGCAGACTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGTCAGATGAACTATGTAACCGAAGTCCTTGTGACAGGATTCCAACTCTTAGAAAGTCGTGCTCA
ACGTGCCATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A098Z0L0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae D39

100

100

1
  ssbB/cilA Streptococcus pneumoniae Rx1

100

100

1
  ssbB/cilA Streptococcus pneumoniae R6

100

100

1
  ssbB/cilA Streptococcus pneumoniae TIGR4

99.237

100

0.992
  ssbB/cilA Streptococcus mitis SK321

98.473

100

0.985
  ssbB/cilA Streptococcus mitis NCTC 12261

98.473

100

0.985
  ssbA Streptococcus mutans UA159

74.809

100

0.748
  ssbB Streptococcus sobrinus strain NIDR 6715-7

70.229

100

0.702
  ssbB Lactococcus lactis subsp. cremoris KW2

59.821

85.496

0.511
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405

Multiple sequence alignment