Detailed information
Bioinformatically predicted
Overview
| Name | rcrP | Type | Regulator |
| Locus tag | R9C51_RS09475 | Genome accession | NZ_AP026921 |
| Coordinates | 1829356..1830177 (-) | Length | 273 a.a. |
| NCBI ID | WP_000601682.1 | Uniprot ID | A0A4K3G7N8 |
| Organism | Streptococcus pneumoniae strain PZ900700027 | ||
| Function | regulate competence (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1820913..1845776 | 1829356..1830177 | within | 0 |
Gene organization within MGE regions
Location: 1820913..1845776
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R9C51_RS09405 (PC0027_18500) | groL | 1820913..1822535 (-) | 1623 | WP_000031568.1 | chaperonin GroEL | - |
| R9C51_RS09410 (PC0027_18510) | groES | 1822551..1822835 (-) | 285 | WP_000917330.1 | co-chaperone GroES | - |
| R9C51_RS09415 (PC0027_18520) | ssbB/cilA | 1822991..1823386 (-) | 396 | WP_000282467.1 | single-stranded DNA-binding protein | Machinery gene |
| R9C51_RS09420 (PC0027_18530) | - | 1823464..1824225 (-) | 762 | WP_057485735.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| R9C51_RS09425 (PC0027_18540) | ytpR | 1824258..1824884 (-) | 627 | WP_000578320.1 | YtpR family tRNA-binding protein | - |
| R9C51_RS09430 (PC0027_18550) | - | 1824900..1825217 (-) | 318 | WP_000615767.1 | thioredoxin family protein | - |
| R9C51_RS09435 (PC0027_18560) | - | 1825214..1825513 (-) | 300 | WP_001013974.1 | DUF4651 domain-containing protein | - |
| R9C51_RS09440 | - | 1825711..1825773 (-) | 63 | WP_219300018.1 | hypothetical protein | - |
| R9C51_RS09445 (PC0027_18570) | - | 1825798..1825989 (-) | 192 | WP_000291825.1 | cell wall-binding protein | - |
| R9C51_RS09450 (PC0027_18580) | - | 1826150..1826824 (-) | 675 | WP_000725751.1 | LiaF transmembrane domain-containing protein | - |
| R9C51_RS09455 (PC0027_18590) | - | 1826830..1827276 (-) | 447 | WP_000776594.1 | LytTR family DNA-binding domain-containing protein | - |
| R9C51_RS09460 | - | 1827390..1827893 (-) | 504 | WP_000800928.1 | phosphatase PAP2 family protein | - |
| R9C51_RS09465 (PC0027_18600) | - | 1827890..1828252 (-) | 363 | WP_000078805.1 | DUF2200 domain-containing protein | - |
| R9C51_RS09470 (PC0027_18610) | - | 1828318..1829163 (-) | 846 | Protein_1859 | ATP-binding cassette domain-containing protein | - |
| R9C51_RS09475 (PC0027_18620) | rcrP | 1829356..1830177 (-) | 822 | WP_000601682.1 | ABC transporter permease | Regulator |
| R9C51_RS09480 (PC0027_18630) | - | 1830194..1830665 (-) | 472 | Protein_1861 | MarR family winged helix-turn-helix transcriptional regulator | - |
| R9C51_RS09485 (PC0027_18640) | - | 1830789..1831505 (-) | 717 | WP_000532876.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| R9C51_RS09490 (PC0027_18650) | ply | 1832388..1833797 (-) | 1410 | WP_001284356.1 | cholesterol-dependent cytolysin pneumolysin | - |
| R9C51_RS09495 (PC0027_18660) | - | 1833808..1834218 (-) | 411 | WP_000595762.1 | hypothetical protein | - |
| R9C51_RS09500 (PC0027_18670) | - | 1834211..1834819 (-) | 609 | WP_000083614.1 | hypothetical protein | - |
| R9C51_RS09505 (PC0027_18680) | - | 1834832..1835290 (-) | 459 | WP_000186955.1 | DUF4231 domain-containing protein | - |
| R9C51_RS09510 (PC0027_18700) | - | 1835415..1835814 (+) | 400 | Protein_1867 | transposase family protein | - |
| R9C51_RS09515 (PC0027_18710) | - | 1836579..1836839 (-) | 261 | WP_001209207.1 | hypothetical protein | - |
| R9C51_RS09520 | - | 1836898..1837449 (-) | 552 | Protein_1869 | hypothetical protein | - |
| R9C51_RS09525 (PC0027_18740) | - | 1837439..1837636 (-) | 198 | WP_000890144.1 | hypothetical protein | - |
| R9C51_RS09530 (PC0027_18750) | - | 1837640..1838224 (-) | 585 | WP_023396456.1 | hypothetical protein | - |
| R9C51_RS09535 (PC0027_18760) | - | 1838632..1839057 (-) | 426 | WP_050232770.1 | hypothetical protein | - |
| R9C51_RS09540 (PC0027_18770) | - | 1839188..1839544 (-) | 357 | Protein_1873 | ImmA/IrrE family metallo-endopeptidase | - |
| R9C51_RS09545 (PC0027_18780) | - | 1839590..1839796 (-) | 207 | WP_000366087.1 | hypothetical protein | - |
| R9C51_RS09550 (PC0027_18790) | - | 1839783..1839944 (-) | 162 | WP_001055999.1 | helix-turn-helix domain-containing protein | - |
| R9C51_RS09555 (PC0027_18800) | lytA | 1840290..1841246 (-) | 957 | WP_050232567.1 | N-acetylmuramoyl-L-alanine amidase LytA | - |
| R9C51_RS09560 (PC0027_18810) | - | 1841622..1842992 (-) | 1371 | WP_001036271.1 | MATE family efflux transporter | - |
| R9C51_RS09565 (PC0027_18820) | recA | 1843299..1844465 (-) | 1167 | WP_001085462.1 | recombinase RecA | Machinery gene |
| R9C51_RS09570 (PC0027_18830) | cinA | 1844520..1845776 (-) | 1257 | WP_000642704.1 | competence/damage-inducible protein A | Machinery gene |
Sequence
Protein
Download Length: 273 a.a. Molecular weight: 30604.17 Da Isoelectric Point: 5.9310
>NTDB_id=98051 R9C51_RS09475 WP_000601682.1 1829356..1830177(-) (rcrP) [Streptococcus pneumoniae strain PZ900700027]
MILLAILFTCFSVYLELEVPTYISKITDLLGSQETNLDELWQPASMMMGMSFLAFLSVVAVGFFASRVAASYTSRLRSDI
FNRVLDYSQTEIKKFSIPSLLTRTTNDITQVQMLITMGLQVVTRGSIMAIWAIGKILGHSEYWLWAVLVVVIVNVLMTTV
LMTLAFPKQSLIQGLTDKLNSITRESLTGIRVVRAYNAEDYQNEKFAAVNDELTRLNLFVNRLMAILNPIMMGISSGLSV
AIYWIGAYVINDAAPIARLPLFSDMIIFMSYAM
MILLAILFTCFSVYLELEVPTYISKITDLLGSQETNLDELWQPASMMMGMSFLAFLSVVAVGFFASRVAASYTSRLRSDI
FNRVLDYSQTEIKKFSIPSLLTRTTNDITQVQMLITMGLQVVTRGSIMAIWAIGKILGHSEYWLWAVLVVVIVNVLMTTV
LMTLAFPKQSLIQGLTDKLNSITRESLTGIRVVRAYNAEDYQNEKFAAVNDELTRLNLFVNRLMAILNPIMMGISSGLSV
AIYWIGAYVINDAAPIARLPLFSDMIIFMSYAM
Nucleotide
Download Length: 822 bp
>NTDB_id=98051 R9C51_RS09475 WP_000601682.1 1829356..1830177(-) (rcrP) [Streptococcus pneumoniae strain PZ900700027]
ATGATTTTACTAGCCATTCTCTTTACTTGCTTTTCGGTCTATCTAGAGTTGGAAGTGCCGACCTATATCTCGAAAATTAC
GGATTTGCTAGGTAGTCAAGAAACTAATTTAGATGAGTTGTGGCAGCCGGCAAGCATGATGATGGGAATGTCCTTTCTTG
CCTTCTTGTCCGTAGTTGCAGTTGGATTTTTTGCATCCCGAGTGGCGGCTTCTTATACTAGTAGGCTGAGAAGTGATATT
TTTAACCGAGTTTTGGATTACTCGCAGACAGAGATTAAGAAATTTTCAATTCCTAGCCTCTTGACGCGTACTACCAATGA
CATTACTCAAGTTCAAATGTTGATTACTATGGGCTTGCAAGTGGTAACGCGTGGTTCAATTATGGCTATCTGGGCTATTG
GGAAGATTTTAGGTCATTCAGAATACTGGCTCTGGGCCGTACTTGTGGTAGTGATTGTCAACGTCCTGATGACGACCGTT
TTGATGACGCTAGCCTTTCCAAAACAGTCCTTGATTCAGGGGTTGACAGATAAACTGAACAGTATCACTCGTGAGAGTTT
AACAGGTATTCGTGTCGTTCGTGCCTACAATGCAGAGGATTATCAAAATGAAAAATTTGCAGCAGTAAATGATGAATTGA
CCCGTTTGAATTTGTTTGTCAACCGTCTTATGGCTATTTTGAATCCTATCATGATGGGGATTTCAAGTGGTTTGAGTGTA
GCGATTTACTGGATTGGGGCCTATGTGATTAACGACGCTGCTCCGATAGCGCGTCTGCCTCTCTTTAGTGACATGATTAT
TTTCATGTCTTATGCCATGTAG
ATGATTTTACTAGCCATTCTCTTTACTTGCTTTTCGGTCTATCTAGAGTTGGAAGTGCCGACCTATATCTCGAAAATTAC
GGATTTGCTAGGTAGTCAAGAAACTAATTTAGATGAGTTGTGGCAGCCGGCAAGCATGATGATGGGAATGTCCTTTCTTG
CCTTCTTGTCCGTAGTTGCAGTTGGATTTTTTGCATCCCGAGTGGCGGCTTCTTATACTAGTAGGCTGAGAAGTGATATT
TTTAACCGAGTTTTGGATTACTCGCAGACAGAGATTAAGAAATTTTCAATTCCTAGCCTCTTGACGCGTACTACCAATGA
CATTACTCAAGTTCAAATGTTGATTACTATGGGCTTGCAAGTGGTAACGCGTGGTTCAATTATGGCTATCTGGGCTATTG
GGAAGATTTTAGGTCATTCAGAATACTGGCTCTGGGCCGTACTTGTGGTAGTGATTGTCAACGTCCTGATGACGACCGTT
TTGATGACGCTAGCCTTTCCAAAACAGTCCTTGATTCAGGGGTTGACAGATAAACTGAACAGTATCACTCGTGAGAGTTT
AACAGGTATTCGTGTCGTTCGTGCCTACAATGCAGAGGATTATCAAAATGAAAAATTTGCAGCAGTAAATGATGAATTGA
CCCGTTTGAATTTGTTTGTCAACCGTCTTATGGCTATTTTGAATCCTATCATGATGGGGATTTCAAGTGGTTTGAGTGTA
GCGATTTACTGGATTGGGGCCTATGTGATTAACGACGCTGCTCCGATAGCGCGTCTGCCTCTCTTTAGTGACATGATTAT
TTTCATGTCTTATGCCATGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rcrP | Streptococcus mutans UA159 |
56.842 |
100 |
0.593 |