Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | WMZ02_RS13330 | Genome accession | NZ_CP150864 |
| Coordinates | 2857262..2857681 (+) | Length | 139 a.a. |
| NCBI ID | WP_025442238.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain NJIFDCVp7 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2852262..2862681
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WMZ02_RS13315 (WMZ02_13315) | pdhR | 2854293..2855060 (-) | 768 | WP_005462576.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| WMZ02_RS13320 (WMZ02_13320) | ampD | 2855466..2856017 (-) | 552 | WP_005462574.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| WMZ02_RS13325 (WMZ02_13325) | nadC | 2856110..2856997 (+) | 888 | WP_025442237.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| WMZ02_RS13330 (WMZ02_13330) | pilA | 2857262..2857681 (+) | 420 | WP_025442238.1 | pilin | Machinery gene |
| WMZ02_RS13335 (WMZ02_13335) | pilB | 2857687..2859372 (+) | 1686 | WP_346338042.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| WMZ02_RS13340 (WMZ02_13340) | pilC | 2859396..2860619 (+) | 1224 | WP_005479682.1 | type II secretion system F family protein | Machinery gene |
| WMZ02_RS13345 (WMZ02_13345) | pilD | 2860684..2861553 (+) | 870 | WP_346338043.1 | A24 family peptidase | Machinery gene |
| WMZ02_RS13350 (WMZ02_13350) | coaE | 2861554..2862168 (+) | 615 | WP_025633754.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 139 a.a. Molecular weight: 14239.23 Da Isoelectric Point: 4.9630
>NTDB_id=973174 WMZ02_RS13330 WP_025442238.1 2857262..2857681(+) (pilA) [Vibrio parahaemolyticus strain NJIFDCVp7]
MKQSKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYQNYVARSEAASGLGSIKSLVTPAELFYQENGTAAAATLAQLGVDG
AANDLGAITSTVANGVANLVFTFNANSSMTGETVTLTRSVAEGWTCAPSANVPALDGCR
MKQSKQKKQQGFTLIELMIVVAIIGVLSAIAVPAYQNYVARSEAASGLGSIKSLVTPAELFYQENGTAAAATLAQLGVDG
AANDLGAITSTVANGVANLVFTFNANSSMTGETVTLTRSVAEGWTCAPSANVPALDGCR
Nucleotide
Download Length: 420 bp
>NTDB_id=973174 WMZ02_RS13330 WP_025442238.1 2857262..2857681(+) (pilA) [Vibrio parahaemolyticus strain NJIFDCVp7]
ATGAAACAGAGTAAACAGAAAAAACAACAAGGTTTTACCTTGATTGAATTGATGATTGTGGTGGCGATTATTGGTGTATT
GTCCGCAATTGCAGTTCCTGCATACCAAAACTATGTAGCTAGAAGTGAAGCGGCATCAGGACTTGGTAGTATAAAGTCCT
TAGTTACCCCAGCAGAGCTGTTCTATCAGGAAAATGGCACCGCTGCAGCTGCAACACTAGCCCAACTTGGGGTTGACGGT
GCAGCTAATGATCTAGGTGCAATAACATCAACAGTAGCGAATGGAGTAGCAAATTTAGTATTTACGTTCAATGCAAACAG
CTCAATGACAGGTGAAACAGTAACGTTGACTCGGTCTGTTGCTGAAGGTTGGACATGTGCACCAAGTGCAAACGTTCCTG
CATTAGACGGCTGTCGATAA
ATGAAACAGAGTAAACAGAAAAAACAACAAGGTTTTACCTTGATTGAATTGATGATTGTGGTGGCGATTATTGGTGTATT
GTCCGCAATTGCAGTTCCTGCATACCAAAACTATGTAGCTAGAAGTGAAGCGGCATCAGGACTTGGTAGTATAAAGTCCT
TAGTTACCCCAGCAGAGCTGTTCTATCAGGAAAATGGCACCGCTGCAGCTGCAACACTAGCCCAACTTGGGGTTGACGGT
GCAGCTAATGATCTAGGTGCAATAACATCAACAGTAGCGAATGGAGTAGCAAATTTAGTATTTACGTTCAATGCAAACAG
CTCAATGACAGGTGAAACAGTAACGTTGACTCGGTCTGTTGCTGAAGGTTGGACATGTGCACCAAGTGCAAACGTTCCTG
CATTAGACGGCTGTCGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
70.29 |
99.281 |
0.698 |
| pilA | Pseudomonas aeruginosa PAK |
47.761 |
96.403 |
0.46 |
| pilA/pilA1 | Eikenella corrodens VA1 |
42.143 |
100 |
0.424 |
| pilA | Acinetobacter baumannii strain A118 |
41.86 |
92.806 |
0.388 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
39.259 |
97.122 |
0.381 |
| pilA | Vibrio cholerae strain A1552 |
39.259 |
97.122 |
0.381 |
| pilA | Vibrio cholerae C6706 |
39.259 |
97.122 |
0.381 |
| pilA2 | Legionella pneumophila str. Paris |
43.089 |
88.489 |
0.381 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
42.276 |
88.489 |
0.374 |