Detailed information NTG0973177

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: WMZ02_RS13345
• Genome accession: NZ_CP150864
• Coordinates: 2860684..2861553 (+)
• Length: 289 a.a.
• NCBI ID: WP_346338043.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain NJIFDCVp7
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2855684..2866553

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WMZ02_RS13325 (WMZ02_13325)	nadC	2856110..2856997 (+)	888	WP_025442237.1	carboxylating nicotinate-nucleotide diphosphorylase	-
WMZ02_RS13330 (WMZ02_13330)	pilA	2857262..2857681 (+)	420	WP_025442238.1	pilin	Machinery gene
WMZ02_RS13335 (WMZ02_13335)	pilB	2857687..2859372 (+)	1686	WP_346338042.1	type IV-A pilus assembly ATPase PilB	Machinery gene
WMZ02_RS13340 (WMZ02_13340)	pilC	2859396..2860619 (+)	1224	WP_005479682.1	type II secretion system F family protein	Machinery gene
WMZ02_RS13345 (WMZ02_13345)	pilD	2860684..2861553 (+)	870	WP_346338043.1	A24 family peptidase	Machinery gene
WMZ02_RS13350 (WMZ02_13350)	coaE	2861554..2862168 (+)	615	WP_025633754.1	dephospho-CoA kinase	-
WMZ02_RS13355 (WMZ02_13355)	zapD	2862196..2862936 (+)	741	WP_015297254.1	cell division protein ZapD	-
WMZ02_RS13360 (WMZ02_13360)	yacG	2863005..2863199 (+)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
WMZ02_RS13365 (WMZ02_13365)	rplS	2863609..2863962 (-)	354	WP_005462554.1	50S ribosomal protein L19	-
WMZ02_RS13370 (WMZ02_13370)	trmD	2864004..2864747 (-)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
WMZ02_RS13375 (WMZ02_13375)	rimM	2864775..2865323 (-)	549	WP_005462552.1	ribosome maturation factor RimM	-
WMZ02_RS13380 (WMZ02_13380)	rpsP	2865352..2865600 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32375.50 Da
• Isoelectric Point: 7.1974

>NTDB_id=973177 WMZ02_RS13345 WP_346338043.1 2860684..2861553(+) (pilD) [Vibrio parahaemolyticus strain NJIFDCVp7]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQELLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIEKAFPFGPFLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=973177 WMZ02_RS13345 WP_346338043.1 2860684..2861553(+) (pilD) [Vibrio parahaemolyticus strain NJIFDCVp7]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTAGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAACTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCTGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGGTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTAGTCCAGTTACGACTACAAAAACAAGGTATAGAGAAAGCTTTCCCTTTCGGCCCATTTTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	89.273	100	0.893
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	52.239	92.734	0.484
pilD	Acinetobacter nosocomialis M2	51.866	92.734	0.481
pilD	Neisseria gonorrhoeae MS11	46.739	95.502	0.446