Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   WN947_RS06105 Genome accession   NZ_CP150491
Coordinates   1213711..1214103 (-) Length   130 a.a.
NCBI ID   WP_340701378.1    Uniprot ID   -
Organism   Brevibacillus borstelensis strain S8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1171408..1230474 1213711..1214103 within 0


Gene organization within MGE regions


Location: 1171408..1230474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WN947_RS05840 - 1171514..1171636 (-) 123 Protein_1144 ATP-binding protein -
  WN947_RS05845 - 1171660..1172103 (+) 444 WP_340701340.1 helix-turn-helix domain-containing protein -
  WN947_RS05850 - 1172164..1172841 (-) 678 WP_340701341.1 SOS response-associated peptidase -
  WN947_RS05855 - 1172884..1173420 (-) 537 WP_340701342.1 hypothetical protein -
  WN947_RS05860 - 1173501..1174307 (-) 807 WP_340701343.1 phospholipase D family protein -
  WN947_RS05865 - 1174514..1175566 (-) 1053 WP_340701344.1 hypothetical protein -
  WN947_RS05870 - 1175979..1177324 (+) 1346 WP_340701345.1 IS3 family transposase -
  WN947_RS05875 - 1177401..1178207 (-) 807 WP_340701346.1 DUF1906 domain-containing protein -
  WN947_RS05880 - 1178191..1178394 (-) 204 WP_340701347.1 hypothetical protein -
  WN947_RS05885 - 1178396..1178590 (-) 195 WP_340701348.1 BhlA/UviB family holin-like peptide -
  WN947_RS05890 - 1178699..1178842 (-) 144 WP_170208406.1 CD1375 family protein -
  WN947_RS05895 - 1178886..1179014 (-) 129 WP_255320374.1 CD1375 family protein -
  WN947_RS05900 - 1179011..1179220 (-) 210 WP_340701349.1 hypothetical protein -
  WN947_RS05905 - 1179220..1182240 (-) 3021 WP_340701350.1 hypothetical protein -
  WN947_RS05910 - 1182296..1182568 (-) 273 WP_340701351.1 hypothetical protein -
  WN947_RS05915 - 1182569..1182889 (-) 321 WP_340701352.1 hypothetical protein -
  WN947_RS05920 - 1182886..1183458 (-) 573 WP_031931962.1 DUF2313 domain-containing protein -
  WN947_RS05925 - 1183455..1184270 (-) 816 WP_340701353.1 baseplate J/gp47 family protein -
  WN947_RS05930 - 1184258..1184692 (-) 435 WP_340701354.1 DUF2634 domain-containing protein -
  WN947_RS05935 - 1184693..1184941 (-) 249 WP_251255871.1 hypothetical protein -
  WN947_RS05940 - 1184945..1185898 (-) 954 WP_340701355.1 hypothetical protein -
  WN947_RS05945 - 1185911..1186504 (-) 594 WP_340701356.1 hypothetical protein -
  WN947_RS05950 - 1186501..1188987 (-) 2487 WP_340701357.1 hypothetical protein -
  WN947_RS05955 - 1189855..1190316 (-) 462 WP_003385945.1 hypothetical protein -
  WN947_RS05960 - 1190328..1190780 (-) 453 WP_003385946.1 hypothetical protein -
  WN947_RS05965 - 1190781..1192118 (-) 1338 WP_327955607.1 phage tail sheath subtilisin-like domain-containing protein -
  WN947_RS05970 - 1192121..1192315 (-) 195 WP_003385950.1 hypothetical protein -
  WN947_RS05975 - 1192315..1192779 (-) 465 WP_003385951.1 hypothetical protein -
  WN947_RS05980 - 1192779..1193261 (-) 483 WP_198291570.1 HK97 gp10 family phage protein -
  WN947_RS05985 - 1193584..1193964 (-) 381 WP_003385954.1 DUF3199 family protein -
  WN947_RS05990 - 1193930..1194172 (-) 243 WP_003385955.1 hypothetical protein -
  WN947_RS05995 - 1194172..1195107 (-) 936 WP_003385956.1 hypothetical protein -
  WN947_RS06000 - 1195122..1196147 (-) 1026 WP_003385958.1 XkdF-like putative serine protease domain-containing protein -
  WN947_RS06005 - 1196169..1197017 (-) 849 WP_340701358.1 phage minor head protein -
  WN947_RS06010 - 1196989..1198461 (-) 1473 WP_340701359.1 phage portal protein -
  WN947_RS06015 - 1198465..1199916 (-) 1452 WP_340701360.1 DEAD/DEAH box helicase family protein -
  WN947_RS06020 - 1199909..1200610 (-) 702 WP_340701361.1 hypothetical protein -
  WN947_RS06025 - 1200857..1201588 (-) 732 WP_340701362.1 DUF4145 domain-containing protein -
  WN947_RS06030 - 1201652..1201885 (-) 234 WP_340701363.1 hypothetical protein -
  WN947_RS06035 - 1202022..1203317 (-) 1296 WP_340701364.1 site-specific DNA-methyltransferase -
  WN947_RS06040 - 1203539..1204033 (-) 495 WP_340701365.1 hypothetical protein -
  WN947_RS06045 - 1204084..1204656 (-) 573 WP_340701366.1 GIY-YIG nuclease family protein -
  WN947_RS06050 - 1205373..1206215 (-) 843 WP_340701367.1 DUF2971 domain-containing protein -
  WN947_RS06055 - 1206423..1206812 (-) 390 WP_340701368.1 ArpU family phage packaging/lysis transcriptional regulator -
  WN947_RS06060 - 1206909..1208078 (-) 1170 WP_340701369.1 XRE family transcriptional regulator -
  WN947_RS06065 - 1208108..1208881 (-) 774 WP_340701370.1 DUF5986 family protein -
  WN947_RS06070 - 1209067..1209285 (+) 219 WP_340701371.1 hypothetical protein -
  WN947_RS06075 - 1209289..1209444 (-) 156 WP_340701372.1 hypothetical protein -
  WN947_RS06080 - 1209475..1210197 (-) 723 WP_340701373.1 hypothetical protein -
  WN947_RS06085 - 1210219..1210692 (-) 474 WP_340701374.1 RusA family crossover junction endodeoxyribonuclease -
  WN947_RS06090 dnaB 1210752..1212137 (-) 1386 WP_340701375.1 replicative DNA helicase -
  WN947_RS06095 - 1212134..1213117 (-) 984 WP_340701376.1 hypothetical protein -
  WN947_RS06100 - 1213300..1213698 (-) 399 WP_340701377.1 hypothetical protein -
  WN947_RS06105 ssbA 1213711..1214103 (-) 393 WP_340701378.1 single-stranded DNA-binding protein Machinery gene
  WN947_RS06110 - 1214104..1214748 (-) 645 WP_340701379.1 ERF family protein -
  WN947_RS06115 - 1214745..1215320 (-) 576 WP_340701380.1 host-nuclease inhibitor Gam family protein -
  WN947_RS06125 - 1215622..1215894 (-) 273 WP_340701381.1 hypothetical protein -
  WN947_RS06130 - 1215959..1216105 (-) 147 WP_340701382.1 hypothetical protein -
  WN947_RS06135 - 1216102..1216458 (-) 357 WP_340701383.1 hypothetical protein -
  WN947_RS06140 - 1216451..1217005 (-) 555 WP_340701384.1 helix-turn-helix transcriptional regulator -
  WN947_RS06145 - 1217461..1217619 (-) 159 WP_340701385.1 hypothetical protein -
  WN947_RS06150 - 1217633..1217878 (-) 246 WP_340701386.1 helix-turn-helix transcriptional regulator -
  WN947_RS06155 - 1218024..1218404 (+) 381 WP_340701590.1 helix-turn-helix transcriptional regulator -
  WN947_RS06160 - 1218457..1218918 (+) 462 WP_340701387.1 hypothetical protein -
  WN947_RS06170 - 1220682..1222700 (+) 2019 WP_340701389.1 ATP-binding protein -
  WN947_RS06175 dgt 1223026..1224357 (-) 1332 WP_340701390.1 dGTP triphosphohydrolase -
  WN947_RS06180 - 1224543..1225355 (-) 813 WP_340701391.1 hypothetical protein -
  WN947_RS06185 - 1225360..1226562 (-) 1203 WP_340701392.1 HNH endonuclease -
  WN947_RS06190 - 1226721..1227113 (-) 393 WP_340701393.1 hypothetical protein -
  WN947_RS06195 - 1227328..1228191 (-) 864 WP_340701394.1 DUF5071 domain-containing protein -
  WN947_RS06200 - 1228318..1228800 (+) 483 WP_340701395.1 ImmA/IrrE family metallo-endopeptidase -
  WN947_RS06205 - 1228837..1230474 (+) 1638 WP_340701396.1 recombinase family protein -

Sequence

Protein


Download         Length: 130 a.a.        Molecular weight: 14802.83 Da        Isoelectric Point: 6.9302

>NTDB_id=970643 WN947_RS06105 WP_340701378.1 1213711..1214103(-) (ssbA) [Brevibacillus borstelensis strain S8]
MNKVILIGHLARDPEMRYTPNAIAVTTFTLAVNRPKSKDGMEQQPDWINCVVWQKTAENCANYLRKGSKVLVEGRIQTRS
FDDKEGKKRYVTEVVGENVQFLSPKNQGEKPDEPCPPREPINISDDDLPF

Nucleotide


Download         Length: 393 bp        

>NTDB_id=970643 WN947_RS06105 WP_340701378.1 1213711..1214103(-) (ssbA) [Brevibacillus borstelensis strain S8]
TTGAACAAAGTCATTTTGATTGGTCACCTCGCTCGCGACCCAGAGATGAGATACACGCCCAACGCCATTGCGGTTACCAC
CTTCACGCTCGCTGTTAACCGCCCCAAGTCAAAAGACGGGATGGAACAGCAACCGGACTGGATCAACTGTGTTGTATGGC
AGAAAACGGCTGAGAATTGTGCCAACTATCTTCGGAAGGGAAGCAAGGTACTGGTGGAGGGGCGGATTCAAACTCGATCT
TTCGACGACAAAGAAGGGAAGAAGAGGTACGTTACTGAGGTTGTTGGAGAGAACGTACAATTTCTGTCGCCAAAGAACCA
AGGGGAGAAGCCAGATGAGCCGTGCCCACCAAGAGAGCCAATCAACATCAGTGATGATGATCTTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

42.105

100

0.554
  ssb Latilactobacillus sakei subsp. sakei 23K

37.278

100

0.485
  ssb Vibrio cholerae strain A1552

34.884

100

0.462
  ssbB Bacillus subtilis subsp. subtilis str. 168

48.214

86.154

0.415
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.221

100

0.415
  ssbA Streptococcus mutans UA159

41.221

100

0.415
  ssbB/cilA Streptococcus mitis NCTC 12261

36.923

100

0.369
  ssbB/cilA Streptococcus pneumoniae TIGR4

36.923

100

0.369
  ssbB/cilA Streptococcus pneumoniae Rx1

36.154

100

0.362
  ssbB/cilA Streptococcus pneumoniae D39

36.154

100

0.362
  ssbB/cilA Streptococcus pneumoniae R6

36.154

100

0.362
  ssbB/cilA Streptococcus mitis SK321

36.154

100

0.362

Multiple sequence alignment