Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   OO778_RS01695 Genome accession   NZ_AP026765
Coordinates   357137..358879 (+) Length   580 a.a.
NCBI ID   WP_080955983.1    Uniprot ID   -
Organism   Vibrio sp. STUT-A16     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 352137..363879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO778_RS01675 (VspSTUT16_02830) pilM 354439..355455 (+) 1017 WP_164667087.1 type IV pilus assembly protein PilM Machinery gene
  OO778_RS01680 (VspSTUT16_02840) pilN 355439..356014 (+) 576 WP_074191323.1 PilN domain-containing protein Machinery gene
  OO778_RS01685 (VspSTUT16_02850) pilO 356007..356600 (+) 594 WP_012841351.1 type 4a pilus biogenesis protein PilO Machinery gene
  OO778_RS01690 (VspSTUT16_02860) pilP 356590..357105 (+) 516 WP_005395715.1 pilus assembly protein PilP Machinery gene
  OO778_RS01695 (VspSTUT16_02870) pilQ 357137..358879 (+) 1743 WP_080955983.1 type IV pilus secretin PilQ family protein Machinery gene
  OO778_RS01700 (VspSTUT16_02880) aroK 359067..359585 (+) 519 WP_005381319.1 shikimate kinase AroK -
  OO778_RS01705 (VspSTUT16_02890) aroB 359618..360718 (+) 1101 WP_258614184.1 3-dehydroquinate synthase -
  OO778_RS01710 (VspSTUT16_02900) - 360771..362285 (+) 1515 WP_264910642.1 AAA family ATPase -
  OO778_RS01715 (VspSTUT16_02910) - 362355..363194 (+) 840 WP_047009939.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 580 a.a.        Molecular weight: 63505.35 Da        Isoelectric Point: 4.4266

>NTDB_id=96837 OO778_RS01695 WP_080955983.1 357137..358879(+) (pilQ) [Vibrio sp. STUT-A16]
MRQGLTRTTRILTGLFSLWLFVFLAPLVAAEEVSSNALKSIDFRTNKDKDAVIVVELASPAAIVDVKRVQEGLSIDLLNT
SVKDEQLYLLDVKDFSTVVESVEVFRDTSTTRLVAHINEEYTHDYRLTGRFLEIKVAKIKPNEKAPDKSILEKEGKLISI
NFQDIPVRNVLQLIADYNQFNLVVSDSVEGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPTDELDLREKQQLE
KQQLEQTMGELSSEIIKVNFAKASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIEVIREIIESLDIPVKQV
QIEARIVTINEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGLYNGGGEGEDGGDGDGVGIDDFLNVNLAATSPNATS
IAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATTVTFKKAVLSLKVTPQIT
PDNRLVLDLSVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRRS
YENVGKSELLIFVTPKVVIQ

Nucleotide


Download         Length: 1743 bp        

>NTDB_id=96837 OO778_RS01695 WP_080955983.1 357137..358879(+) (pilQ) [Vibrio sp. STUT-A16]
ATGAGACAAGGATTAACACGTACAACAAGGATACTAACTGGGCTCTTCTCCTTATGGTTGTTTGTATTTTTAGCCCCTTT
AGTGGCAGCAGAAGAAGTATCGTCTAATGCCTTAAAGAGTATCGACTTTCGCACTAATAAAGATAAAGACGCCGTTATAG
TCGTTGAACTGGCGTCACCTGCCGCGATTGTTGATGTCAAACGCGTACAGGAAGGGTTAAGTATCGATTTGCTTAATACT
TCGGTAAAAGACGAGCAACTGTATCTCCTAGACGTAAAAGATTTCTCGACTGTGGTTGAAAGTGTAGAGGTGTTTCGCGA
TACCTCAACTACGCGCTTGGTTGCGCACATTAATGAAGAATATACGCATGATTACCGTTTAACGGGGCGATTCTTGGAAA
TCAAAGTGGCTAAGATCAAACCCAATGAGAAAGCCCCGGATAAAAGCATTCTAGAAAAAGAAGGCAAGCTCATTTCAATT
AACTTCCAAGATATTCCTGTACGTAACGTGTTACAGCTGATTGCTGACTACAACCAGTTCAACTTGGTTGTCTCAGACTC
CGTAGAAGGTAACCTCACACTTCGTCTTGATGGTGTTCCGTGGCAGCAAGTGCTGGATATTATTTTGCAAGTTAAGGGGT
TAGATAAGCGTGTTGATGGCAACGTGATTCTGGTTGCTCCAACAGATGAGCTTGATCTGCGCGAAAAACAGCAACTCGAA
AAGCAGCAGCTAGAACAAACGATGGGAGAGCTTTCGTCTGAAATCATCAAGGTAAACTTCGCTAAAGCATCAGATATTGC
AGAGATGATCAACGGAGAAGGGAACATCAGTATGTTGTCTGAGCGAGGCAGTATGACCATTGATGAGCGGACTAACTCGT
TATTGATTCGTGAGCTACCTGAAAACATTGAAGTGATTCGAGAAATTATTGAATCTTTGGATATCCCGGTGAAGCAGGTT
CAAATTGAAGCGCGTATTGTGACCATCAATGAAGGCAACATGGACGAGTTGGGAATTCGCTGGGGCTTTACCTCTATTAA
TGGCAATAACACGGTTGGTGGTTCTATCGAAAACAACCTTGCCACGATCGGTTTATATAACGGTGGTGGTGAAGGAGAAG
ACGGTGGTGACGGTGATGGAGTAGGTATCGATGACTTCCTAAACGTAAACTTAGCTGCAACTAGTCCAAACGCGACTAGC
ATTGCTTTTCAGGTTGCAAAATTAGGCTCAGACACCTTGTTAGACCTCGAGCTTTCTGCGCTGCAACAAGAGTCCAAAGC
TGAGATTATCTCAAGCCCACGTTTGATCACTACCAATAAGAAGCCTGCCTATATTGAGCAAGGTACCGAGATACCTTATC
TAGAGTCCTCATCAAGTGGTGCTACGACGGTAACGTTCAAAAAAGCAGTATTGAGTTTGAAGGTGACGCCACAAATTACA
CCGGATAACCGTCTTGTGTTGGACTTAAGCGTTACGCAAGATAGACCTGGACAAGTCGTGAAAACAGGCACTGGTGAAGC
CGTTGCGATTGATACTCAGCGTATCGGGACGCAAGTGTTAGTAAATAACGGTGAAACCGTCGTTCTTGGTGGTATTTTCC
AGCACAGCATTACTAACTCGGTGGACAAAGTGCCTTTGTTAGGCGATCTGCCACTATTAGGTGCGCTTTTCCGTCGAAGT
TATGAAAATGTTGGCAAAAGTGAGCTGTTAATTTTCGTCACCCCTAAGGTGGTGATTCAGTAG

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(254-319)

Bacterial type II and III secretion system protein (Secretin)

(420-578)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

92.759

100

0.928
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

74.614

100

0.75
  pilQ Vibrio cholerae strain A1552

74.614

100

0.75
  pilQ Legionella pneumophila strain Lp02

40.787

96.379

0.393
  pilQ Legionella pneumophila strain ERS1305867

40.787

96.379

0.393
  pilQ Pseudomonas aeruginosa PAK

39.716

97.241

0.386
  comQ Acinetobacter baylyi ADP1

37.349

100

0.374
  pilQ Acinetobacter baumannii strain A118

36.409

100

0.374
  pilQ Acinetobacter baumannii D1279779

36.409

100

0.374

Multiple sequence alignment