Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | OO778_RS01685 | Genome accession | NZ_AP026765 |
| Coordinates | 356007..356600 (+) | Length | 197 a.a. |
| NCBI ID | WP_012841351.1 | Uniprot ID | A0AAE4SAG9 |
| Organism | Vibrio sp. STUT-A16 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 351007..361600
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OO778_RS01670 (VspSTUT16_02820) | - | 351734..354295 (-) | 2562 | WP_264910641.1 | PBP1A family penicillin-binding protein | - |
| OO778_RS01675 (VspSTUT16_02830) | pilM | 354439..355455 (+) | 1017 | WP_164667087.1 | type IV pilus assembly protein PilM | Machinery gene |
| OO778_RS01680 (VspSTUT16_02840) | pilN | 355439..356014 (+) | 576 | WP_074191323.1 | PilN domain-containing protein | Machinery gene |
| OO778_RS01685 (VspSTUT16_02850) | pilO | 356007..356600 (+) | 594 | WP_012841351.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| OO778_RS01690 (VspSTUT16_02860) | pilP | 356590..357105 (+) | 516 | WP_005395715.1 | pilus assembly protein PilP | Machinery gene |
| OO778_RS01695 (VspSTUT16_02870) | pilQ | 357137..358879 (+) | 1743 | WP_080955983.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| OO778_RS01700 (VspSTUT16_02880) | aroK | 359067..359585 (+) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| OO778_RS01705 (VspSTUT16_02890) | aroB | 359618..360718 (+) | 1101 | WP_258614184.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23042.45 Da Isoelectric Point: 4.7906
>NTDB_id=96835 OO778_RS01685 WP_012841351.1 356007..356600(+) (pilO) [Vibrio sp. STUT-A16]
MVDWQDLEIDEMAEWPLLPQLVVIALLIFLIQGFGYWFYLKPKEEQLNNLVQQEQTLKVALKIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSEHFLYRLPLNIELTGDFHDIGHFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEETNNDK
MVDWQDLEIDEMAEWPLLPQLVVIALLIFLIQGFGYWFYLKPKEEQLNNLVQQEQTLKVALKIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSEHFLYRLPLNIELTGDFHDIGHFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEETNNDK
Nucleotide
Download Length: 594 bp
>NTDB_id=96835 OO778_RS01685 WP_012841351.1 356007..356600(+) (pilO) [Vibrio sp. STUT-A16]
ATGGTTGATTGGCAGGATCTCGAAATAGATGAAATGGCAGAGTGGCCATTGTTGCCTCAGCTTGTGGTTATCGCGCTGCT
GATTTTCCTCATTCAAGGTTTTGGCTATTGGTTTTACCTTAAGCCAAAAGAAGAGCAATTGAATAACTTGGTCCAGCAGG
AGCAGACGCTCAAGGTAGCACTGAAGATCAAAGCGAACAAAGTAGCTGCATTGCCTCAGCTTCAATCTCAATTGGATGAA
CTCACCACGCGTTACGAGTTATTGCTACAACAACTGCCCGCGCAAAAAGAGTTGGCTACGATGCTCGCTTCGGTGAATGA
ACTCGGTATCGACAATAAGTTGACCTTTACCCGTATCGACTGGGGTGAAAAGCAATCAGAGCATTTCCTCTATCGTCTTC
CTTTAAACATTGAGTTAACGGGAGATTTTCATGACATCGGACATTTTTCTCAGGCGATAGCAACGCTACCTCGAATCATC
ACGTTTAAAGATGTGACTTGGCAGCGTGTCAGCCAAGAAAGTGAAACTCTGCACTTTAGGGTACGAGCCAATACCTATCA
GTTTAAGCCAGAGGAGACGAACAATGACAAGTAA
ATGGTTGATTGGCAGGATCTCGAAATAGATGAAATGGCAGAGTGGCCATTGTTGCCTCAGCTTGTGGTTATCGCGCTGCT
GATTTTCCTCATTCAAGGTTTTGGCTATTGGTTTTACCTTAAGCCAAAAGAAGAGCAATTGAATAACTTGGTCCAGCAGG
AGCAGACGCTCAAGGTAGCACTGAAGATCAAAGCGAACAAAGTAGCTGCATTGCCTCAGCTTCAATCTCAATTGGATGAA
CTCACCACGCGTTACGAGTTATTGCTACAACAACTGCCCGCGCAAAAAGAGTTGGCTACGATGCTCGCTTCGGTGAATGA
ACTCGGTATCGACAATAAGTTGACCTTTACCCGTATCGACTGGGGTGAAAAGCAATCAGAGCATTTCCTCTATCGTCTTC
CTTTAAACATTGAGTTAACGGGAGATTTTCATGACATCGGACATTTTTCTCAGGCGATAGCAACGCTACCTCGAATCATC
ACGTTTAAAGATGTGACTTGGCAGCGTGTCAGCCAAGAAAGTGAAACTCTGCACTTTAGGGTACGAGCCAATACCTATCA
GTTTAAGCCAGAGGAGACGAACAATGACAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
88.947 |
96.447 |
0.858 |
| pilO | Vibrio cholerae strain A1552 |
70.051 |
100 |
0.701 |