Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | OO778_RS01680 | Genome accession | NZ_AP026765 |
| Coordinates | 355439..356014 (+) | Length | 191 a.a. |
| NCBI ID | WP_074191323.1 | Uniprot ID | - |
| Organism | Vibrio sp. STUT-A16 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 350439..361014
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OO778_RS01665 (VspSTUT16_02810) | oxyR | 350771..351682 (+) | 912 | WP_005395720.1 | DNA-binding transcriptional regulator OxyR | - |
| OO778_RS01670 (VspSTUT16_02820) | - | 351734..354295 (-) | 2562 | WP_264910641.1 | PBP1A family penicillin-binding protein | - |
| OO778_RS01675 (VspSTUT16_02830) | pilM | 354439..355455 (+) | 1017 | WP_164667087.1 | type IV pilus assembly protein PilM | Machinery gene |
| OO778_RS01680 (VspSTUT16_02840) | pilN | 355439..356014 (+) | 576 | WP_074191323.1 | PilN domain-containing protein | Machinery gene |
| OO778_RS01685 (VspSTUT16_02850) | pilO | 356007..356600 (+) | 594 | WP_012841351.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| OO778_RS01690 (VspSTUT16_02860) | pilP | 356590..357105 (+) | 516 | WP_005395715.1 | pilus assembly protein PilP | Machinery gene |
| OO778_RS01695 (VspSTUT16_02870) | pilQ | 357137..358879 (+) | 1743 | WP_080955983.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| OO778_RS01700 (VspSTUT16_02880) | aroK | 359067..359585 (+) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| OO778_RS01705 (VspSTUT16_02890) | aroB | 359618..360718 (+) | 1101 | WP_258614184.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 22339.83 Da Isoelectric Point: 7.0774
>NTDB_id=96834 OO778_RS01680 WP_074191323.1 355439..356014(+) (pilN) [Vibrio sp. STUT-A16]
MLYRINLLPWRENQREEHRRRFISLIALGMLVAIGIQWGIGKFFEYQQDQQQERLDYLTHYIAELDQRIEAMKIAEQEHS
KILERLKVVEGLQNGRNKTTEFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPKLATMLDNMERSAKLNDVEMHSIV
HGKARFGKEFQTFKVSFMFKVPEKKAEAQHG
MLYRINLLPWRENQREEHRRRFISLIALGMLVAIGIQWGIGKFFEYQQDQQQERLDYLTHYIAELDQRIEAMKIAEQEHS
KILERLKVVEGLQNGRNKTTEFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPKLATMLDNMERSAKLNDVEMHSIV
HGKARFGKEFQTFKVSFMFKVPEKKAEAQHG
Nucleotide
Download Length: 576 bp
>NTDB_id=96834 OO778_RS01680 WP_074191323.1 355439..356014(+) (pilN) [Vibrio sp. STUT-A16]
GTGCTTTATCGCATTAATTTACTTCCTTGGCGAGAGAACCAAAGAGAAGAGCACCGACGTCGTTTCATTAGCTTGATCGC
GTTAGGCATGTTGGTCGCCATTGGTATTCAATGGGGTATTGGAAAGTTTTTTGAGTACCAACAAGATCAGCAGCAGGAGC
GGCTTGATTACCTTACTCACTACATTGCTGAGCTCGACCAGCGTATTGAAGCAATGAAAATCGCCGAGCAAGAGCACAGC
AAAATCCTCGAACGTTTAAAAGTGGTTGAAGGGTTACAAAACGGTAGAAACAAAACGACCGAGTTTATGAACTTGATGCC
AGCCGTCATTCCTGAAGGTGTATATGTCGACAAGATCAAAATGAATGATCTGGAAATTGAGATCTCGGGGATCTCTGATA
GCACTCCAAAACTTGCCACGATGCTGGACAACATGGAGCGTTCGGCCAAGTTGAATGATGTAGAAATGCACTCCATCGTT
CACGGAAAAGCGCGTTTTGGAAAAGAGTTCCAAACGTTCAAAGTGTCTTTCATGTTCAAAGTGCCGGAGAAAAAAGCGGA
GGCCCAGCATGGTTGA
GTGCTTTATCGCATTAATTTACTTCCTTGGCGAGAGAACCAAAGAGAAGAGCACCGACGTCGTTTCATTAGCTTGATCGC
GTTAGGCATGTTGGTCGCCATTGGTATTCAATGGGGTATTGGAAAGTTTTTTGAGTACCAACAAGATCAGCAGCAGGAGC
GGCTTGATTACCTTACTCACTACATTGCTGAGCTCGACCAGCGTATTGAAGCAATGAAAATCGCCGAGCAAGAGCACAGC
AAAATCCTCGAACGTTTAAAAGTGGTTGAAGGGTTACAAAACGGTAGAAACAAAACGACCGAGTTTATGAACTTGATGCC
AGCCGTCATTCCTGAAGGTGTATATGTCGACAAGATCAAAATGAATGATCTGGAAATTGAGATCTCGGGGATCTCTGATA
GCACTCCAAAACTTGCCACGATGCTGGACAACATGGAGCGTTCGGCCAAGTTGAATGATGTAGAAATGCACTCCATCGTT
CACGGAAAAGCGCGTTTTGGAAAAGAGTTCCAAACGTTCAAAGTGTCTTTCATGTTCAAAGTGCCGGAGAAAAAAGCGGA
GGCCCAGCATGGTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
83.77 |
100 |
0.838 |
| pilN | Vibrio cholerae strain A1552 |
59.574 |
98.429 |
0.586 |