Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   OO774_RS01560 Genome accession   NZ_AP026763
Coordinates   327695..329425 (+) Length   576 a.a.
NCBI ID   WP_264904122.1    Uniprot ID   -
Organism   Vibrio sp. STUT-A11     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 322695..334425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO774_RS01540 (VspSTUT11_02540) pilM 325003..326016 (+) 1014 WP_264904118.1 type IV pilus assembly protein PilM Machinery gene
  OO774_RS01545 (VspSTUT11_02550) pilN 326000..326575 (+) 576 WP_264904119.1 PilN domain-containing protein Machinery gene
  OO774_RS01550 (VspSTUT11_02560) pilO 326568..327161 (+) 594 WP_264904120.1 type 4a pilus biogenesis protein PilO Machinery gene
  OO774_RS01555 (VspSTUT11_02570) pilP 327151..327666 (+) 516 WP_264904121.1 pilus assembly protein PilP Machinery gene
  OO774_RS01560 (VspSTUT11_02580) pilQ 327695..329425 (+) 1731 WP_264904122.1 type IV pilus secretin PilQ family protein Machinery gene
  OO774_RS01565 (VspSTUT11_02590) aroK 329614..330132 (+) 519 WP_014233147.1 shikimate kinase AroK -
  OO774_RS01570 (VspSTUT11_02600) aroB 330165..331265 (+) 1101 WP_264904123.1 3-dehydroquinate synthase -
  OO774_RS01575 (VspSTUT11_02610) - 331318..332817 (+) 1500 WP_264904124.1 AAA family ATPase -
  OO774_RS01580 (VspSTUT11_02620) - 332887..333726 (+) 840 WP_014233144.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 63152.09 Da        Isoelectric Point: 4.4913

>NTDB_id=96794 OO774_RS01560 WP_264904122.1 327695..329425(+) (pilQ) [Vibrio sp. STUT-A11]
MMMRQGLTRTPRVLTGLLSFWLVILFAPFALAEGGSSNTLKSIDFRTNKDKDAVIAVELSSPSAIVDIKRVQEGLSIDLL
NTSVKDDQLYLIDVKDFSTVVDSVEVFRDISTTRLVAHISDDYTHDYRLAGRYLEITVSKLKPDEKVLDKSILEKEGKRI
SINFQDIPVRNVLQLIADYNKFNLVVSDSVEGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPTDELDLREKQQ
LEKQQLEEEMGELSSEIIKVNFAKASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENISVIRDIVESLDIPVK
QVQIEARIVTVSEGNMDELGVRWGFSSINGNNTVGGSIENNLATIGLYEGDGEGGSVGIDDFLNVNLAATNPSATSLAFQ
VAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATTITFKKAVLSLKVTPQITPDNR
LVLDLSVTQDRPGQVVKTGTGEAVTIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRRSYEKV
GKSELLIFVTPKVVIQ

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=96794 OO774_RS01560 WP_264904122.1 327695..329425(+) (pilQ) [Vibrio sp. STUT-A11]
ATGATGATGAGACAAGGACTTACACGTACACCAAGGGTACTCACAGGGCTCTTATCCTTTTGGTTAGTTATACTTTTCGC
CCCTTTTGCTTTAGCTGAAGGTGGAAGCTCTAATACGTTAAAGAGCATCGACTTTCGAACCAATAAGGACAAAGACGCGG
TGATTGCGGTGGAGTTGTCTTCACCGTCGGCGATTGTCGATATTAAGCGTGTTCAGGAAGGGCTCAGCATCGACTTGCTT
AATACGTCAGTGAAAGATGATCAGCTATACCTCATTGACGTAAAAGACTTTTCAACCGTGGTGGACAGTGTGGAAGTCTT
TCGGGACATTTCGACGACCCGTTTAGTCGCGCATATCAGTGATGACTACACTCACGATTACCGTTTGGCTGGACGCTATC
TGGAAATCACGGTCAGTAAACTCAAACCTGATGAAAAAGTACTGGATAAGAGCATTTTAGAGAAAGAAGGTAAACGGATA
TCGATTAATTTCCAGGATATTCCGGTACGAAACGTCTTACAGCTCATTGCTGACTATAACAAGTTCAACCTGGTGGTATC
AGACTCCGTTGAAGGCAATTTGACACTGCGCCTTGATGGTGTGCCATGGCAGCAGGTTTTGGACATTATTCTGCAGGTAA
AAGGGTTAGATAAGCGTGTCGATGGTAATGTCATTCTTGTTGCGCCGACGGATGAACTTGACCTTCGAGAGAAACAGCAA
TTAGAAAAGCAGCAACTTGAAGAAGAAATGGGTGAGCTGTCGTCTGAAATCATTAAAGTGAACTTTGCTAAAGCGTCCGA
TATTGCTGAGATGATTAATGGTGAAGGCAATATCAGTATGCTCTCTGAGCGGGGTAGCATGACCATTGATGAGCGCACTA
ACTCACTGTTGATCAGAGAGCTACCGGAGAATATCTCGGTCATACGAGACATCGTCGAATCACTTGATATTCCGGTTAAG
CAGGTTCAGATCGAAGCGAGGATTGTCACCGTCAGCGAAGGTAATATGGATGAGCTAGGTGTTCGTTGGGGGTTCTCTTC
TATCAACGGCAATAATACGGTTGGTGGCTCGATTGAAAATAATCTGGCAACCATTGGTCTTTATGAAGGTGATGGAGAAG
GCGGTAGCGTGGGAATTGATGATTTTCTTAACGTTAATCTCGCCGCTACTAACCCAAGCGCAACCAGTCTTGCGTTTCAG
GTCGCTAAGCTGGGTTCTGACACTTTACTCGACCTGGAGCTGTCAGCTCTACAGCAGGAATCGAAAGCAGAGATCATCTC
AAGCCCTCGTTTAATCACGACTAATAAAAAACCTGCCTATATAGAACAAGGCACAGAAATACCGTACTTAGAATCATCCT
CGAGTGGTGCCACAACCATCACGTTCAAAAAAGCGGTGTTAAGTTTAAAAGTGACACCACAAATAACACCGGACAACCGT
TTAGTGCTGGATTTAAGTGTCACTCAGGACCGGCCTGGGCAAGTGGTTAAAACGGGTACGGGCGAAGCGGTTACAATAGA
CACTCAGAGAATAGGTACTCAAGTCTTAGTCAACAATGGAGAGACGGTGGTACTTGGCGGCATTTTCCAACACAGTATTA
CCAACTCAGTGGATAAAGTGCCATTACTCGGCGATCTGCCGCTATTAGGTGCACTTTTCCGCAGAAGTTACGAAAAAGTT
GGCAAAAGTGAACTGTTGATTTTTGTTACACCAAAGGTTGTTATTCAATAG

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(256-321)

Bacterial type II and III secretion system protein (Secretin)

(416-574)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

88.966

100

0.896
  pilQ Vibrio cholerae strain A1552

74.87

100

0.75
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

74.87

100

0.75
  pilQ Pseudomonas aeruginosa PAK

39.895

98.785

0.394
  pilQ Legionella pneumophila strain ERS1305867

41.133

94.965

0.391
  pilQ Legionella pneumophila strain Lp02

41.133

94.965

0.391
  comQ Acinetobacter baylyi ADP1

37.217

99.826

0.372
  pilQ Acinetobacter baumannii strain A118

36.568

100

0.366
  pilQ Acinetobacter baumannii D1279779

36.568

100

0.366

Multiple sequence alignment