Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   OO774_RS01545 Genome accession   NZ_AP026763
Coordinates   326000..326575 (+) Length   191 a.a.
NCBI ID   WP_264904119.1    Uniprot ID   -
Organism   Vibrio sp. STUT-A11     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 321000..331575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OO774_RS01530 (VspSTUT11_02520) oxyR 321313..322221 (+) 909 WP_264904116.1 DNA-binding transcriptional regulator OxyR -
  OO774_RS01535 (VspSTUT11_02530) - 322292..324859 (-) 2568 WP_264904117.1 PBP1A family penicillin-binding protein -
  OO774_RS01540 (VspSTUT11_02540) pilM 325003..326016 (+) 1014 WP_264904118.1 type IV pilus assembly protein PilM Machinery gene
  OO774_RS01545 (VspSTUT11_02550) pilN 326000..326575 (+) 576 WP_264904119.1 PilN domain-containing protein Machinery gene
  OO774_RS01550 (VspSTUT11_02560) pilO 326568..327161 (+) 594 WP_264904120.1 type 4a pilus biogenesis protein PilO Machinery gene
  OO774_RS01555 (VspSTUT11_02570) pilP 327151..327666 (+) 516 WP_264904121.1 pilus assembly protein PilP Machinery gene
  OO774_RS01560 (VspSTUT11_02580) pilQ 327695..329425 (+) 1731 WP_264904122.1 type IV pilus secretin PilQ family protein Machinery gene
  OO774_RS01565 (VspSTUT11_02590) aroK 329614..330132 (+) 519 WP_014233147.1 shikimate kinase AroK -
  OO774_RS01570 (VspSTUT11_02600) aroB 330165..331265 (+) 1101 WP_264904123.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22214.62 Da        Isoelectric Point: 6.6549

>NTDB_id=96791 OO774_RS01545 WP_264904119.1 326000..326575(+) (pilN) [Vibrio sp. STUT-A11]
MLYRINLLPWRENQREEHRRRFVGLIILGVFFAVGIQWGIGKFYAFQQDQQQGRLDYLTQYIAELEQRIEAMKIAEQEHS
KILARLKVVEGLQNGRNKTTEFMNLMSAVMPEGVYVDKIKMNDLEIEIAGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKERFGKEFQTFKVSFMFKAVEQEEGGQHG

Nucleotide


Download         Length: 576 bp        

>NTDB_id=96791 OO774_RS01545 WP_264904119.1 326000..326575(+) (pilN) [Vibrio sp. STUT-A11]
GTGCTATATCGAATTAACCTATTGCCCTGGCGGGAAAACCAAAGGGAAGAACATCGTCGTCGTTTTGTTGGACTGATCAT
TTTAGGGGTGTTTTTTGCTGTTGGTATTCAATGGGGGATCGGCAAGTTTTATGCGTTCCAGCAAGACCAGCAGCAAGGCC
GACTCGATTACCTCACTCAGTATATTGCAGAGCTTGAGCAACGTATTGAAGCAATGAAAATTGCAGAGCAAGAGCACAGC
AAAATATTAGCGCGTTTGAAGGTGGTTGAAGGCTTGCAAAATGGTCGCAATAAAACCACCGAATTCATGAACCTGATGTC
TGCTGTTATGCCCGAAGGCGTGTACGTCGATAAGATCAAAATGAATGATCTGGAAATAGAAATAGCGGGCATTTCTGACA
GCACGCCTCGCTTGGCAACCATGCTCGATAACATGGAGCGTTCTGCAAAACTATTGGACGTTGAAATGCACTCCATTGTT
CATGGCAAAGAGCGTTTCGGTAAAGAATTTCAGACCTTCAAAGTGTCTTTCATGTTTAAAGCGGTAGAGCAGGAAGAGGG
CGGTCAGCATGGTTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

81.152

100

0.812
  pilN Vibrio cholerae strain A1552

59.375

100

0.597

Multiple sequence alignment