Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   V4331_RS00670 Genome accession   NZ_CP146743
Coordinates   139046..139351 (+) Length   101 a.a.
NCBI ID   WP_096368800.1    Uniprot ID   -
Organism   Lactococcus formosensis subsp. formosensis strain L5     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 134046..144351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V4331_RS00650 (V4331_00650) - 134973..136634 (+) 1662 WP_341784218.1 S-layer homology domain-containing protein -
  V4331_RS00655 (V4331_00655) rpsU 136763..136939 (+) 177 WP_003134539.1 30S ribosomal protein S21 -
  V4331_RS00660 (V4331_00660) comGA 137125..138069 (+) 945 WP_341784488.1 competence type IV pilus ATPase ComGA Machinery gene
  V4331_RS00665 (V4331_00665) comGB 138008..139027 (+) 1020 WP_341784489.1 competence type IV pilus assembly protein ComGB Machinery gene
  V4331_RS00670 (V4331_00670) comYC 139046..139351 (+) 306 WP_096368800.1 competence type IV pilus major pilin ComGC Machinery gene
  V4331_RS00675 (V4331_00675) comGD 139326..139742 (+) 417 Protein_124 competence type IV pilus minor pilin ComGD -
  V4331_RS00680 (V4331_00680) comGE 139774..140007 (+) 234 WP_269457349.1 competence type IV pilus minor pilin ComGE -
  V4331_RS00685 (V4331_00685) comGF 139994..140428 (+) 435 WP_231951074.1 competence type IV pilus minor pilin ComGF -
  V4331_RS00690 (V4331_00690) - 140663..141508 (+) 846 WP_096368796.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  V4331_RS00695 (V4331_00695) - 141595..142464 (-) 870 WP_165713363.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11277.22 Da        Isoelectric Point: 10.0997

>NTDB_id=943992 V4331_RS00670 WP_096368800.1 139046..139351(+) (comYC) [Lactococcus formosensis subsp. formosensis strain L5]
MEKKRFKAFTLIEMLVVLLIISVLLLLFVPNLAKEKKNIQNTGQAAVVKVVEGQAELYQLDKQDGPSLGKLVSGGLITQK
QADSYNDYYTKNPNAKRNIPN

Nucleotide


Download         Length: 306 bp        

>NTDB_id=943992 V4331_RS00670 WP_096368800.1 139046..139351(+) (comYC) [Lactococcus formosensis subsp. formosensis strain L5]
ATGGAAAAAAAGAGATTCAAAGCTTTTACTTTAATTGAAATGCTTGTCGTCTTACTTATTATCAGTGTTTTACTTTTATT
GTTTGTTCCAAACTTGGCTAAAGAAAAGAAGAATATCCAAAATACAGGTCAAGCAGCAGTTGTTAAAGTTGTCGAAGGGC
AAGCCGAACTTTATCAACTTGATAAACAGGATGGTCCAAGTTTAGGGAAACTTGTCTCCGGTGGGTTAATTACACAGAAG
CAAGCCGATAGCTACAATGATTATTATACTAAGAACCCTAATGCAAAACGTAATATCCCGAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus gordonii str. Challis substr. CH1

61.765

100

0.624
  comGC Lactococcus lactis subsp. cremoris KW2

62

99.01

0.614
  comYC Streptococcus mutans UA140

65.263

94.059

0.614
  comYC Streptococcus mutans UA159

65.263

94.059

0.614
  comGC/cglC Streptococcus mitis SK321

62.626

98.02

0.614
  comGC/cglC Streptococcus pneumoniae D39

58.586

98.02

0.574
  comGC/cglC Streptococcus pneumoniae Rx1

58.586

98.02

0.574
  comGC/cglC Streptococcus pneumoniae R6

58.586

98.02

0.574
  comGC/cglC Streptococcus pneumoniae TIGR4

58.586

98.02

0.574
  comGC/cglC Streptococcus mitis NCTC 12261

62.637

90.099

0.564
  comYC Streptococcus suis isolate S10

58.025

80.198

0.465
  comGC Staphylococcus aureus MW2

50.633

78.218

0.396
  comGC Staphylococcus aureus N315

50.633

78.218

0.396