Detailed information NTG0939861

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: V6Z53_RS15900
• Genome accession: NZ_CP145732
• Coordinates: 3421588..3422679 (+)
• Length: 363 a.a.
• NCBI ID: WP_338580528.1
• Uniprot ID: -
• Organism: Pseudomonas sp. MAG733B
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3416588..3427679

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6Z53_RS15885 (V6Z53_15885)	-	3417524..3418456 (+)	933	WP_338580525.1	sugar kinase	-
V6Z53_RS15890 (V6Z53_15890)	-	3418592..3418867 (-)	276	WP_007933743.1	peptidylprolyl isomerase	-
V6Z53_RS15895 (V6Z53_15895)	-	3418937..3421474 (-)	2538	WP_338580527.1	PAS domain S-box protein	-
V6Z53_RS15900 (V6Z53_15900)	pilU	3421588..3422679 (+)	1092	WP_338580528.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
V6Z53_RS15905 (V6Z53_15905)	-	3422774..3424729 (-)	1956	WP_338580529.1	acetoacetate--CoA ligase	-
V6Z53_RS15910 (V6Z53_15910)	hbdH	3424866..3425639 (-)	774	WP_338580530.1	3-hydroxybutyrate dehydrogenase	-
V6Z53_RS15915 (V6Z53_15915)	-	3425647..3427038 (-)	1392	WP_338580532.1	GntP family permease	-

Sequence

Protein

• Length: 363 a.a.
• Molecular weight: 40481.46 Da
• Isoelectric Point: 6.5679

>NTDB_id=939861 V6Z53_RS15900 WP_338580528.1 3421588..3422679(+) (pilU) [Pseudomonas sp. MAG733B]
MEIDALLKRLASQDGSDLYLSTGAPPCARFDGVLAPLTDQPFKPGDIAAIAGSIMDAEQRLEFDRELEMNLAISLIGIGR
FRVNIFKQRNDVSMVVRNVKLDIPRFEDLKLPLVLLETVMLKQGLILFVGATDSGKSTSLAALIDHRNRHTRGHIVTIED
PIEYIHRHKKSIINQREVGVDTRSFHAALKNTLRQAPDVVLIGEIRDRETMEHALAFADTGHLVISTLHAHNAHQALDRI
INFFPEERRSQLLNDLGNNLKACVSQRLVRSRDGQRRVAVEVMLGTPTVGDLIRLNQFSELKGVMEKSAAQGMQTFDGAL
YALVVEGVIDEEEALKHADSVNNLRLRLKLHTESTPGDWGLMD

Nucleotide

• Length: 1092 bp

>NTDB_id=939861 V6Z53_RS15900 WP_338580528.1 3421588..3422679(+) (pilU) [Pseudomonas sp. MAG733B]
ATGGAAATCGATGCGTTGTTAAAACGTCTGGCCAGCCAGGATGGCTCCGACCTTTACCTGTCCACCGGCGCGCCGCCCTG
TGCGCGTTTCGACGGGGTTCTTGCGCCCCTGACCGATCAGCCGTTCAAACCGGGGGACATCGCGGCGATTGCCGGGTCCA
TCATGGACGCCGAACAGCGTCTGGAGTTCGATCGTGAACTGGAGATGAACCTGGCAATCTCTTTGATCGGTATCGGGCGC
TTTCGGGTCAATATTTTCAAGCAGCGTAACGATGTGTCGATGGTCGTGCGCAACGTCAAACTCGACATTCCGCGCTTCGA
AGACCTCAAATTGCCGCTGGTGTTGCTGGAAACGGTAATGCTCAAGCAAGGCTTGATACTGTTCGTCGGCGCCACCGACT
CGGGCAAGTCTACCTCGCTGGCGGCGCTCATCGACCACCGCAATCGCCATACTCGCGGGCATATCGTCACCATCGAAGAC
CCGATCGAGTACATCCACCGGCATAAAAAATCGATCATCAATCAGCGCGAGGTCGGCGTCGATACGCGCAGTTTCCATGC
TGCGTTGAAAAACACCCTGCGTCAGGCGCCGGACGTGGTGCTGATCGGCGAGATCCGCGATCGCGAAACCATGGAACATG
CCCTGGCCTTCGCCGACACCGGGCATCTGGTGATCTCCACGCTGCATGCTCACAACGCCCATCAGGCGCTGGACCGCATC
ATCAACTTCTTCCCCGAAGAGCGCCGGAGTCAACTGCTCAATGATCTGGGGAATAACCTCAAGGCCTGCGTTTCCCAACG
GCTGGTGCGTAGCCGCGATGGGCAACGGCGGGTGGCGGTGGAGGTGATGCTGGGGACGCCAACGGTTGGCGATCTGATTC
GGCTCAATCAGTTTTCCGAGCTCAAGGGTGTGATGGAGAAGTCAGCGGCGCAGGGGATGCAGACGTTTGACGGCGCGCTT
TATGCTTTGGTCGTAGAGGGCGTGATTGATGAGGAAGAAGCGTTGAAGCATGCCGATTCGGTGAACAATCTGCGGTTGCG
GTTGAAGTTGCACACGGAGTCCACTCCTGGCGATTGGGGGCTCATGGACTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (116-270)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	54.93	97.796	0.537
pilU	Acinetobacter baylyi ADP1	51.124	98.072	0.501
pilU	Vibrio cholerae strain A1552	50	96.419	0.482
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	40.708	93.388	0.38
pilT	Vibrio cholerae O1 biovar El Tor strain E7946	40.841	91.736	0.375
pilT	Vibrio cholerae strain A1552	40.841	91.736	0.375
pilT	Legionella pneumophila strain ERS1305867	40.12	92.011	0.369
pilT	Legionella pneumophila strain Lp02	40.12	92.011	0.369
pilT	Pseudomonas stutzeri DSM 10701	38.953	94.766	0.369
pilT	Pseudomonas aeruginosa PAK	38.953	94.766	0.369
pilT	Neisseria meningitidis 8013	38.261	95.041	0.364
pilT	Neisseria gonorrhoeae MS11	38.04	95.592	0.364