Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   MWM14_RS01600 Genome accession   NZ_AP025621
Coordinates   306676..307020 (+) Length   114 a.a.
NCBI ID   WP_003247808.1    Uniprot ID   A0AB38R2G4
Organism   Parageobacillus thermoglucosidasius strain BH4-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 301676..312020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWM14_RS01570 (PthBH41_02720) - 302138..302593 (+) 456 WP_003247799.1 DUF1284 domain-containing protein -
  MWM14_RS01575 - 302580..302699 (+) 120 WP_230457072.1 histidine kinase -
  MWM14_RS01580 (PthBH41_02730) - 302732..304108 (+) 1377 WP_003247801.1 aspartate kinase -
  MWM14_RS01585 (PthBH41_02740) - 304320..305282 (+) 963 WP_003247802.1 processed acidic surface protein -
  MWM14_RS01590 (PthBH41_02750) - 305288..305896 (+) 609 WP_003247804.1 class D sortase -
  MWM14_RS01595 (PthBH41_02760) - 305915..306367 (-) 453 WP_003247806.1 YwpF-like family protein -
  MWM14_RS01600 (PthBH41_02770) ssbB 306676..307020 (+) 345 WP_003247808.1 single-stranded DNA-binding protein Machinery gene
  MWM14_RS01605 (PthBH41_02780) - 307170..307580 (-) 411 WP_035501694.1 helix-turn-helix domain-containing protein -
  MWM14_RS01610 (PthBH41_02790) - 307786..308286 (+) 501 WP_003247812.1 hypothetical protein -
  MWM14_RS01615 (PthBH41_02800) - 308971..310329 (+) 1359 WP_003247814.1 peptidoglycan-binding protein -
  MWM14_RS01620 (PthBH41_02810) wecB 310682..311827 (+) 1146 WP_003247816.1 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) -

Sequence

Protein


Download         Length: 114 a.a.        Molecular weight: 12789.63 Da        Isoelectric Point: 9.6276

>NTDB_id=93080 MWM14_RS01600 WP_003247808.1 306676..307020(+) (ssbB) [Parageobacillus thermoglucosidasius strain BH4-1]
MINQVVLVGRLTKDPELRYTADGAAVVNITLAVTRNFRNAEGGIDTDFVQCTLWRKVAENTANYCRKGSIIGVMGRIQTR
NYEKKDGQRVFVTEVVAESVRFMGGKTHAWIEHS

Nucleotide


Download         Length: 345 bp        

>NTDB_id=93080 MWM14_RS01600 WP_003247808.1 306676..307020(+) (ssbB) [Parageobacillus thermoglucosidasius strain BH4-1]
ATGATCAACCAAGTCGTGCTTGTCGGCCGGCTGACAAAAGATCCGGAACTTCGATATACCGCCGATGGAGCAGCGGTCGT
TAACATCACATTAGCGGTGACAAGAAATTTTCGTAATGCGGAAGGAGGAATTGACACTGATTTTGTCCAATGCACGCTCT
GGCGGAAAGTAGCAGAGAATACGGCGAATTATTGCCGGAAAGGTTCCATTATCGGCGTCATGGGACGGATTCAAACGCGA
AATTATGAAAAGAAAGACGGACAGCGAGTGTTTGTGACGGAAGTGGTGGCCGAATCCGTGCGATTTATGGGCGGCAAGAC
GCATGCATGGATCGAACATTCATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

66.981

92.982

0.623
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.551

93.86

0.596
  ssb Latilactobacillus sakei subsp. sakei 23K

57.009

93.86

0.535
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.593

94.737

0.404
  ssbA Streptococcus mutans UA159

41.667

94.737

0.395
  ssbB/cilA Streptococcus mitis NCTC 12261

39.815

94.737

0.377
  ssbB/cilA Streptococcus pneumoniae TIGR4

39.815

94.737

0.377
  ssbB Lactococcus lactis subsp. cremoris KW2

38.053

99.123

0.377
  ssbB/cilA Streptococcus pneumoniae Rx1

38.889

94.737

0.368
  ssbB/cilA Streptococcus pneumoniae D39

38.889

94.737

0.368
  ssbB/cilA Streptococcus pneumoniae R6

38.889

94.737

0.368
  ssbB/cilA Streptococcus mitis SK321

38.889

94.737

0.368
  ssb Vibrio cholerae strain A1552

36.842

100

0.368

Multiple sequence alignment