Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   V1502_RS19335 Genome accession   NZ_CP143546
Coordinates   3963452..3963835 (-) Length   127 a.a.
NCBI ID   WP_409252222.1    Uniprot ID   -
Organism   Bacillus sp. SCS-153A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3958452..3968835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1502_RS19320 (V1502_19320) - 3958469..3961291 (+) 2823 WP_409252219.1 DEAD/DEAH box helicase -
  V1502_RS19325 (V1502_19325) - 3961511..3962743 (+) 1233 WP_409252220.1 DUF5667 domain-containing protein -
  V1502_RS19330 (V1502_19330) - 3963218..3963406 (-) 189 WP_409252221.1 hypothetical protein -
  V1502_RS19335 (V1502_19335) ssbB 3963452..3963835 (-) 384 WP_409252222.1 single-stranded DNA-binding protein Machinery gene
  V1502_RS19340 (V1502_19340) - 3964066..3964371 (-) 306 WP_409252223.1 DUF5658 family protein -
  V1502_RS19345 (V1502_19345) - 3964658..3965098 (+) 441 WP_409252224.1 YwpF family protein -
  V1502_RS19350 (V1502_19350) sinR 3965200..3965520 (+) 321 WP_409252225.1 helix-turn-helix domain-containing protein Regulator
  V1502_RS19355 (V1502_19355) - 3965554..3965685 (-) 132 WP_409254396.1 anti-repressor SinI family protein -
  V1502_RS19360 (V1502_19360) - 3966417..3966773 (+) 357 WP_409252226.1 helix-turn-helix domain-containing protein -
  V1502_RS19365 (V1502_19365) - 3966804..3967127 (-) 324 WP_409252227.1 hypothetical protein -
  V1502_RS19370 (V1502_19370) fabZ 3967393..3967827 (-) 435 WP_409252228.1 3-hydroxyacyl-ACP dehydratase FabZ -
  V1502_RS19375 (V1502_19375) - 3967987..3968271 (-) 285 WP_409252229.1 DNA-directed RNA polymerase subunit beta -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14417.49 Da        Isoelectric Point: 9.3927

>NTDB_id=929579 V1502_RS19335 WP_409252222.1 3963452..3963835(-) (ssbB) [Bacillus sp. SCS-153A]
MINQVTLVGRLTKDPEMRYTSEGKAVLNVTLAVNRQFKNQEGEYEADFVLCTMWKRAAENTAKYCNKGSVLGVVGRIQTR
NYENDHGKRIYVTEVVAEQVKFLDGRPTQPSKPQPKNPEVEKALPVF

Nucleotide


Download         Length: 384 bp        

>NTDB_id=929579 V1502_RS19335 WP_409252222.1 3963452..3963835(-) (ssbB) [Bacillus sp. SCS-153A]
ATGATTAATCAGGTCACGTTGGTAGGCAGGCTGACGAAGGATCCGGAGATGCGTTACACATCCGAGGGGAAGGCGGTGTT
GAATGTCACTTTGGCAGTCAATCGTCAGTTTAAAAATCAGGAAGGGGAATATGAAGCAGACTTTGTTCTTTGTACGATGT
GGAAGCGGGCGGCTGAAAACACGGCAAAGTACTGCAATAAAGGGTCTGTGCTGGGTGTGGTAGGGCGCATTCAAACCAGG
AACTATGAGAACGACCATGGGAAGCGAATTTATGTAACGGAAGTGGTGGCGGAACAGGTGAAATTTCTGGATGGAAGGCC
AACTCAACCTTCTAAGCCCCAACCGAAGAATCCGGAAGTGGAAAAGGCATTGCCGGTCTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.964

87.402

0.559
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.462

81.89

0.52
  ssb Latilactobacillus sakei subsp. sakei 23K

56.481

85.039

0.48
  ssbA Streptococcus mutans UA159

47.664

84.252

0.402
  ssbB Streptococcus sobrinus strain NIDR 6715-7

47.664

84.252

0.402
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.75

88.189

0.386
  ssbB/cilA Streptococcus pneumoniae Rx1

42.857

88.189

0.378
  ssbB/cilA Streptococcus pneumoniae D39

42.857

88.189

0.378
  ssbB/cilA Streptococcus pneumoniae R6

42.857

88.189

0.378
  ssbB/cilA Streptococcus mitis SK321

42.857

88.189

0.378
  ssbB/cilA Streptococcus mitis NCTC 12261

41.964

88.189

0.37
  ssbB Lactococcus lactis subsp. cremoris KW2

42.991

84.252

0.362