Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   V1502_RS19350 Genome accession   NZ_CP143546
Coordinates   3965200..3965520 (+) Length   106 a.a.
NCBI ID   WP_409252225.1    Uniprot ID   -
Organism   Bacillus sp. SCS-153A     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3960200..3970520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1502_RS19325 (V1502_19325) - 3961511..3962743 (+) 1233 WP_409252220.1 DUF5667 domain-containing protein -
  V1502_RS19330 (V1502_19330) - 3963218..3963406 (-) 189 WP_409252221.1 hypothetical protein -
  V1502_RS19335 (V1502_19335) ssbB 3963452..3963835 (-) 384 WP_409252222.1 single-stranded DNA-binding protein Machinery gene
  V1502_RS19340 (V1502_19340) - 3964066..3964371 (-) 306 WP_409252223.1 DUF5658 family protein -
  V1502_RS19345 (V1502_19345) - 3964658..3965098 (+) 441 WP_409252224.1 YwpF family protein -
  V1502_RS19350 (V1502_19350) sinR 3965200..3965520 (+) 321 WP_409252225.1 helix-turn-helix domain-containing protein Regulator
  V1502_RS19355 (V1502_19355) - 3965554..3965685 (-) 132 WP_409254396.1 anti-repressor SinI family protein -
  V1502_RS19360 (V1502_19360) - 3966417..3966773 (+) 357 WP_409252226.1 helix-turn-helix domain-containing protein -
  V1502_RS19365 (V1502_19365) - 3966804..3967127 (-) 324 WP_409252227.1 hypothetical protein -
  V1502_RS19370 (V1502_19370) fabZ 3967393..3967827 (-) 435 WP_409252228.1 3-hydroxyacyl-ACP dehydratase FabZ -
  V1502_RS19375 (V1502_19375) - 3967987..3968271 (-) 285 WP_409252229.1 DNA-directed RNA polymerase subunit beta -
  V1502_RS19380 (V1502_19380) - 3968287..3969126 (-) 840 WP_409252230.1 flagellar hook-basal body protein -
  V1502_RS19385 (V1502_19385) - 3969152..3969994 (-) 843 WP_409252231.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 12349.18 Da        Isoelectric Point: 8.4726

>NTDB_id=929580 V1502_RS19350 WP_409252225.1 3965200..3965520(+) (sinR) [Bacillus sp. SCS-153A]
MIGERVKKLRQERKMSMTELADKAGVAKSYLSSIERNLQKNPSVQFLEKISKALNVPVDSLLYDTVEDKHIDSDWVSIVE
QAMESGISKEQFREFIEFNKWKLNQK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=929580 V1502_RS19350 WP_409252225.1 3965200..3965520(+) (sinR) [Bacillus sp. SCS-153A]
ATGATCGGGGAAAGAGTAAAAAAGCTTAGACAAGAACGTAAGATGTCCATGACAGAGCTTGCCGATAAGGCAGGAGTGGC
GAAGTCTTATTTGAGTTCGATTGAGAGAAACCTGCAAAAGAATCCATCGGTTCAGTTTTTGGAGAAAATCTCAAAAGCAC
TGAATGTCCCTGTCGATTCTTTATTATATGATACGGTGGAAGATAAGCACATCGACTCAGACTGGGTCAGCATTGTTGAA
CAAGCAATGGAATCCGGTATTAGCAAGGAGCAATTCCGGGAATTTATTGAGTTCAATAAGTGGAAATTAAATCAAAAGTA
A

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(71-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

57.798

100

0.594