Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   AB3239_RS03925 Genome accession   NZ_CP166831
Coordinates   757303..758433 (+) Length   376 a.a.
NCBI ID   WP_095252653.1    Uniprot ID   -
Organism   Bacillus subtilis strain TE3T-UV25     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 752303..763433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3239_RS03910 (AB3239_03910) yeeF 752672..754681 (-) 2010 WP_041851218.1 LXG family T7SS effector deoxyribonuclease toxin YeeF -
  AB3239_RS03915 (AB3239_03915) - 754889..755959 (+) 1071 WP_370957239.1 hypothetical protein -
  AB3239_RS03920 (AB3239_03920) - 756003..757157 (+) 1155 WP_070548670.1 lysozyme inhibitor LprI family protein -
  AB3239_RS03925 (AB3239_03925) rapC 757303..758433 (+) 1131 WP_095252653.1 response regulator aspartate phosphatase RapH Regulator
  AB3239_RS03930 (AB3239_03930) phrH 758423..758596 (+) 174 WP_038828348.1 phosphatase RapH inhibitor PhrH -
  AB3239_RS03935 (AB3239_03935) yeeI 758754..759473 (+) 720 WP_003233863.1 YebC/PmpR family DNA-binding transcriptional regulator -
  AB3239_RS03940 (AB3239_03940) yeeK 759607..760044 (+) 438 WP_370957240.1 spore coat protein YeeK -
  AB3239_RS03945 (AB3239_03945) yezE 760159..760743 (+) 585 WP_370957241.1 TetR/AcrR family transcriptional regulator -
  AB3239_RS03950 (AB3239_03950) yesE 760822..761265 (+) 444 WP_003233857.1 nuclear transport factor 2 family protein -
  AB3239_RS03955 (AB3239_03955) yesF 761262..762130 (+) 869 Protein_727 NAD-dependent epimerase/dehydratase family protein -
  AB3239_RS03960 (AB3239_03960) cotJA 762256..762504 (+) 249 WP_003219489.1 spore coat-associated protein CotJA -
  AB3239_RS03965 (AB3239_03965) cotJB 762488..762751 (+) 264 WP_003219491.1 spore coat protein CotJB -
  AB3239_RS03970 (AB3239_03970) cotJC 762766..763335 (+) 570 WP_003233850.1 spore coat protein CotJC -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 43951.27 Da        Isoelectric Point: 6.0243

>NTDB_id=929038 AB3239_RS03925 WP_095252653.1 757303..758433(+) (rapC) [Bacillus subtilis strain TE3T-UV25]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGQTYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDEIEKAEFHFKVAEAYYHMKQTHVSMH
HILQALDIYQKNPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALKLATDIQNDRFIAISLLNIANSYDRSGDDQMAV
EHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL
LSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=929038 AB3239_RS03925 WP_095252653.1 757303..758433(+) (rapC) [Bacillus subtilis strain TE3T-UV25]
TTGAGTCAAGCCATACCGTCTTCGCGTGTTGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGATTCTGAAAGCGGAGGTGGAGCAGGACATTCAGCAGATGGAAGAAGACCAGGATTTGCTGATCTATTATT
CTCTGATGTGTTTTCGTCACCAGCTGATGCTTGATTATTTGGAGCCGGGACAAACATACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGATCAAAAAGAATATGTGGAAGCGATCGGGTATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGAAATTGAGAAAGCGGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCCATGTGTCGATGCAT
CATATTCTTCAAGCCTTAGACATTTATCAAAAAAATCCCCTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGC
CGGCAACTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAGGCGGCGCTCAAATTGGCAACGGACATTC
AAAACGATCGGTTTATCGCCATTTCTCTATTGAACATCGCGAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTA
GAACATTTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTAAGCTG
GACATTATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTC
ACAAATTTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGAAAAATTCATGATCTT
TTAAGCTATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAG
CTGTCACTTTGAACAAGCCGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTAT
ATGCCTATTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_7)

(222-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.691

100

0.407
  rapF Bacillus subtilis subsp. subtilis str. 168

39.788

100

0.399