Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   VP456_RS02175 Genome accession   NZ_CP142142
Coordinates   398549..398713 (+) Length   54 a.a.
NCBI ID   WP_269194677.1    Uniprot ID   -
Organism   Bacillus velezensis strain PD9     
Function   preventing the degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context

Location: 393549..403713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP456_RS02170 (VP456_02160) srfAB 395440..398532 (+) 3093 Protein_388 surfactin non-ribosomal peptide synthetase SrfAB -
  VP456_RS02175 (VP456_02165) comS 398549..398713 (+) 165 WP_269194677.1 competence protein ComS Regulator

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 6211.19 Da        Isoelectric Point: 11.7559

>NTDB_id=921894 VP456_RS02175 WP_269194677.1 398549..398713(+) (comS) [Bacillus velezensis strain PD9]
MRARRSSSLNRSDKRLIRSIILFPQHSAGCISLISSDRPARATTSLLYFCWKDQ

Nucleotide


Download         Length: 165 bp        

>NTDB_id=921894 VP456_RS02175 WP_269194677.1 398549..398713(+) (comS) [Bacillus velezensis strain PD9]
ATGAGAGCGAGGAGGAGCAGCAGTTTGAACCGATCCGACAAGCGCCTTATCAGGAGCATTATCCTGTTTCCTCAGCACAG
CGCAGGATGTATATCCTTAATCAGCTCGGACAGGCCAGCACGAGCTACAACGTCCCTGCTGTACTTCTGCTGGAAGGATC
AGTAG

Domains

Predicted by InterproScan.

Bacillus competence protein S (ComS)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Bacillus subtilis subsp. subtilis str. 168

58.696

85.185

0.5