Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   VP456_RS02140 Genome accession   NZ_CP142142
Coordinates   381102..381500 (-) Length   132 a.a.
NCBI ID   WP_029973909.1    Uniprot ID   -
Organism   Bacillus velezensis strain PD9     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 376102..386500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP456_RS02115 (VP456_02105) - 376274..377476 (+) 1203 WP_014416870.1 GTP-binding protein -
  VP456_RS02120 (VP456_02110) - 377541..378677 (+) 1137 WP_007609290.1 zinc-dependent alcohol dehydrogenase -
  VP456_RS02125 (VP456_02115) - 378692..379126 (+) 435 WP_014416871.1 RDD family protein -
  VP456_RS02130 (VP456_02120) - 379243..379521 (+) 279 WP_263612330.1 YckD family protein -
  VP456_RS02135 (VP456_02125) - 379625..381061 (+) 1437 WP_014416872.1 glycoside hydrolase family 1 protein -
  VP456_RS02140 (VP456_02130) nin/comJ 381102..381500 (-) 399 WP_029973909.1 competence protein ComJ Regulator
  VP456_RS02145 (VP456_02135) nucA/comI 381521..381958 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  VP456_RS02150 (VP456_02140) hxlB 382289..382846 (-) 558 WP_021494205.1 6-phospho-3-hexuloisomerase -
  VP456_RS02155 (VP456_02145) hxlA 382843..383478 (-) 636 WP_014416875.1 3-hexulose-6-phosphate synthase -
  VP456_RS02160 (VP456_02150) - 383710..384072 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14877.90 Da        Isoelectric Point: 4.7846

>NTDB_id=921892 VP456_RS02140 WP_029973909.1 381102..381500(-) (nin/comJ) [Bacillus velezensis strain PD9]
MIKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMAKRLSFNIPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=921892 VP456_RS02140 WP_029973909.1 381102..381500(-) (nin/comJ) [Bacillus velezensis strain PD9]
TTGATTAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAAGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGGCAAAGCGGCTTTCTTTTAATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75.758

100

0.758