Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   OCV49_RS01175 Genome accession   NZ_AP025499
Coordinates   259551..261245 (+) Length   564 a.a.
NCBI ID   WP_102279228.1    Uniprot ID   -
Organism   Vibrio lentus strain LMG 21034     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 254551..266245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV49_RS01155 pilM 256759..257784 (+) 1026 WP_102296354.1 type IV pilus assembly protein PilM Machinery gene
  OCV49_RS01160 pilN 257768..258382 (+) 615 WP_192853348.1 PilN domain-containing protein Machinery gene
  OCV49_RS01165 pilO 258375..258986 (+) 612 WP_192853349.1 type 4a pilus biogenesis protein PilO Machinery gene
  OCV49_RS01170 pilP 258973..259491 (+) 519 WP_076668786.1 pilus assembly protein PilP Machinery gene
  OCV49_RS01175 pilQ 259551..261245 (+) 1695 WP_102279228.1 type IV pilus secretin PilQ family protein Machinery gene
  OCV49_RS01180 aroK 261422..261940 (+) 519 WP_004729664.1 shikimate kinase AroK -
  OCV49_RS01185 aroB 261967..263055 (+) 1089 WP_192853350.1 3-dehydroquinate synthase -
  OCV49_RS01190 - 263135..264652 (+) 1518 WP_192853351.1 AAA family ATPase -
  OCV49_RS01195 - 264722..265570 (+) 849 WP_017104652.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 564 a.a.        Molecular weight: 61395.97 Da        Isoelectric Point: 4.3783

>NTDB_id=92174 OCV49_RS01175 WP_102279228.1 259551..261245(+) (pilQ) [Vibrio lentus strain LMG 21034]
MNKGLQGAVLSMMLFFSVMSYAETSPNNLDNIDFRVNKNKDAVIIIELATSTAVVDVQRVQEGLSIELLNTKVDDDKLYL
LDVKDFATLVEGVEVFRETPSTRLLATIADDYQYEYNLKGRFIEVIVSKPLVKESVAEKSVLEKEGKLISINFQDIPVRN
VLQLIADYNDFNLVVSDSVSGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKAELDLREQQALEKSRLEEELG
ELKSEIIKINFAKATDIADMIGGEGAVSMLSDRGSITIDERTNSLLIRELEENIAVIRGIIESLDIPVKQVQIEARIVTV
TEGNLDELGVRWGVSSTNGSFKVGGSIEGNHPSQIAPYDDNGGDSAIDDYLNVNLGATSPNASSIAFQVAKLGSDTLLDL
ELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATSVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRP
GQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSVSSTVDKVPLLGDLPVLGALFRRSYENVGKSELLIFVTPK
VVIQ

Nucleotide


Download         Length: 1695 bp        

>NTDB_id=92174 OCV49_RS01175 WP_102279228.1 259551..261245(+) (pilQ) [Vibrio lentus strain LMG 21034]
ATGAACAAAGGGCTACAGGGTGCAGTGCTGTCTATGATGTTGTTTTTTAGCGTGATGAGTTACGCAGAGACATCACCCAA
TAATTTGGACAACATCGATTTCAGGGTCAACAAGAACAAAGATGCGGTCATCATTATTGAATTGGCAACCAGCACTGCGG
TGGTCGATGTTCAAAGAGTTCAAGAAGGGCTGAGCATTGAACTGCTTAATACTAAGGTGGATGACGACAAGCTTTATTTG
TTGGATGTAAAAGACTTTGCCACCTTAGTTGAAGGGGTTGAGGTCTTCAGAGAAACGCCGAGTACCCGACTGTTAGCCAC
GATCGCCGATGATTATCAATACGAGTACAACCTAAAAGGTCGTTTTATCGAGGTCATCGTGAGTAAGCCGCTGGTTAAAG
AGAGTGTCGCTGAGAAGAGTGTGTTGGAGAAAGAGGGCAAACTCATCTCAATTAATTTCCAAGACATTCCAGTTCGTAAT
GTTCTTCAGCTCATTGCAGATTACAACGACTTCAACTTAGTGGTGTCTGATTCGGTCTCAGGAAACCTCACTTTACGGTT
AGATGGCGTACCCTGGCAGCAAGTTCTCGACATTATCTTACAAGTTAAAGGCTTGGATAAGCGTGTTGATGGCAATGTCA
TCTTGGTTGCGCCAAAAGCTGAACTTGACCTTCGAGAGCAGCAAGCCTTAGAAAAATCTCGTTTGGAAGAAGAGCTGGGT
GAGCTTAAATCGGAAATCATCAAGATTAACTTTGCTAAAGCGACCGACATCGCCGATATGATTGGCGGGGAAGGGGCGGT
GAGTATGCTGTCTGACCGCGGTTCGATTACCATTGATGAGAGAACTAACTCACTGCTCATTCGTGAATTGGAAGAAAACA
TTGCGGTGATACGAGGCATCATTGAATCGCTAGACATTCCCGTGAAGCAAGTTCAGATAGAAGCGCGTATTGTCACTGTT
ACCGAGGGTAATCTTGATGAACTAGGAGTGCGTTGGGGCGTTTCCTCGACCAACGGAAGCTTCAAAGTCGGCGGCTCAAT
AGAAGGTAACCATCCATCACAAATTGCACCGTATGACGATAATGGTGGAGATAGTGCGATTGACGATTACCTCAACGTTA
ATCTAGGGGCGACATCGCCTAATGCATCAAGCATTGCGTTTCAGGTGGCTAAGCTGGGTTCAGATACCTTGCTTGATCTT
GAATTATCGGCACTGCAACAAGAATCAAAAGCTGAGATTATTTCTAGCCCACGCTTAATCACCACCAATAAAAAGCCCGC
TTACATTGAGCAAGGTACTGAAATCCCTTATTTAGAATCCTCTTCCAGTGGTGCAACTTCGGTCGCATTTAAAAAAGCGG
TCTTGAGTCTTAAGGTCACACCACAGATAACCCCTGACAATCGTCTGGTATTAGATTTGAGTGTTACACAGGACAGACCG
GGTCAGGTTGTGAAAACAGGAACCGGTGAGGCTGTAGCAATCGATACCCAAAGAATTGGCACGCAAGTGCTTGTTAATAA
TGGTGAAACGGTTGTTCTTGGTGGGATATTTCAACACAGTGTTAGCAGCACAGTCGACAAAGTTCCGTTGTTGGGAGACC
TGCCAGTTTTGGGGGCATTGTTCCGTCGCAGCTATGAAAATGTGGGTAAAAGTGAACTACTTATTTTTGTTACACCTAAA
GTTGTGATTCAGTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(171-219)

Bacterial type II/III secretion system short domain (Secretin_N)

(245-310)

Bacterial type II and III secretion system protein (Secretin)

(404-562)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

80.839

97.163

0.785
  pilQ Vibrio cholerae strain A1552

80.256

96.986

0.778
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

80.256

96.986

0.778
  pilQ Legionella pneumophila strain Lp02

42.962

96.986

0.417
  pilQ Legionella pneumophila strain ERS1305867

42.962

96.986

0.417
  pilQ Pseudomonas aeruginosa PAK

40.934

98.759

0.404
  comQ Acinetobacter baylyi ADP1

38.783

100

0.395
  pilQ Acinetobacter baumannii strain A118

37.478

100

0.385
  pilQ Acinetobacter baumannii D1279779

37.478

100

0.385

Multiple sequence alignment