Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   OCV49_RS01160 Genome accession   NZ_AP025499
Coordinates   257768..258382 (+) Length   204 a.a.
NCBI ID   WP_192853348.1    Uniprot ID   -
Organism   Vibrio lentus strain LMG 21034     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 252768..263382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV49_RS01140 - 252864..253043 (-) 180 WP_017086012.1 hypothetical protein -
  OCV49_RS01145 oxyR 253042..253935 (+) 894 WP_017108572.1 DNA-binding transcriptional regulator OxyR -
  OCV49_RS01150 - 254049..256607 (-) 2559 WP_065104131.1 PBP1A family penicillin-binding protein -
  OCV49_RS01155 pilM 256759..257784 (+) 1026 WP_102296354.1 type IV pilus assembly protein PilM Machinery gene
  OCV49_RS01160 pilN 257768..258382 (+) 615 WP_192853348.1 PilN domain-containing protein Machinery gene
  OCV49_RS01165 pilO 258375..258986 (+) 612 WP_192853349.1 type 4a pilus biogenesis protein PilO Machinery gene
  OCV49_RS01170 pilP 258973..259491 (+) 519 WP_076668786.1 pilus assembly protein PilP Machinery gene
  OCV49_RS01175 pilQ 259551..261245 (+) 1695 WP_102279228.1 type IV pilus secretin PilQ family protein Machinery gene
  OCV49_RS01180 aroK 261422..261940 (+) 519 WP_004729664.1 shikimate kinase AroK -
  OCV49_RS01185 aroB 261967..263055 (+) 1089 WP_192853350.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23386.87 Da        Isoelectric Point: 9.6393

>NTDB_id=92171 OCV49_RS01160 WP_192853348.1 257768..258382(+) (pilN) [Vibrio lentus strain LMG 21034]
MLHQINLLPWRDEIRAQHKKRFVHLVILGVIIALAGQWAVGNYFHAQQDKQQARLTYLKQYIAQLDRQIQSLKVAEQEHK
AILTRLDVVESLQLGRNKTTDFMNLMPELIPEGVYVDKIKMNGQEIEMSGISDSTARLATMLDNLERSESLNSVEMHSIV
HNRKRFNKEFQTFKVSFVFSPVSLDNTTAESTTAKIKEKGANHG

Nucleotide


Download         Length: 615 bp        

>NTDB_id=92171 OCV49_RS01160 WP_192853348.1 257768..258382(+) (pilN) [Vibrio lentus strain LMG 21034]
ATGTTGCATCAAATTAACCTGTTGCCTTGGCGTGATGAGATTCGCGCTCAGCACAAAAAGCGCTTTGTTCATCTGGTCAT
TCTTGGTGTCATCATCGCGCTTGCAGGGCAATGGGCGGTGGGCAACTATTTCCATGCTCAGCAAGACAAGCAGCAAGCAC
GTCTTACTTACCTAAAGCAATACATTGCCCAGCTCGACCGACAAATCCAATCACTGAAAGTCGCGGAGCAAGAACATAAA
GCGATCCTGACTCGACTCGACGTTGTGGAATCCTTACAGCTTGGTCGCAACAAGACCACTGACTTCATGAACTTGATGCC
AGAGCTGATTCCTGAGGGCGTCTATGTCGACAAGATAAAGATGAATGGTCAAGAGATTGAAATGTCGGGCATCAGCGACA
GTACCGCTCGCCTTGCGACTATGTTGGATAACTTGGAGCGCTCTGAGTCACTTAACAGTGTCGAGATGCATTCCATTGTT
CATAACCGTAAGCGCTTCAATAAGGAGTTCCAGACCTTCAAGGTCTCTTTTGTGTTTAGCCCTGTTTCTTTAGACAACAC
AACCGCAGAGAGCACAACCGCGAAGATAAAAGAGAAGGGGGCAAACCATGGCTAG

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-174)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

64.674

90.196

0.583
  pilN Vibrio cholerae strain A1552

64.674

90.196

0.583

Multiple sequence alignment