Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   OCV49_RS01155 Genome accession   NZ_AP025499
Coordinates   256759..257784 (+) Length   341 a.a.
NCBI ID   WP_102296354.1    Uniprot ID   A0AA44VVS2
Organism   Vibrio lentus strain LMG 21034     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 251759..262784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV49_RS01135 - 252092..252820 (-) 729 WP_017073712.1 glutathione peroxidase -
  OCV49_RS01140 - 252864..253043 (-) 180 WP_017086012.1 hypothetical protein -
  OCV49_RS01145 oxyR 253042..253935 (+) 894 WP_017108572.1 DNA-binding transcriptional regulator OxyR -
  OCV49_RS01150 - 254049..256607 (-) 2559 WP_065104131.1 PBP1A family penicillin-binding protein -
  OCV49_RS01155 pilM 256759..257784 (+) 1026 WP_102296354.1 type IV pilus assembly protein PilM Machinery gene
  OCV49_RS01160 pilN 257768..258382 (+) 615 WP_192853348.1 PilN domain-containing protein Machinery gene
  OCV49_RS01165 pilO 258375..258986 (+) 612 WP_192853349.1 type 4a pilus biogenesis protein PilO Machinery gene
  OCV49_RS01170 pilP 258973..259491 (+) 519 WP_076668786.1 pilus assembly protein PilP Machinery gene
  OCV49_RS01175 pilQ 259551..261245 (+) 1695 WP_102279228.1 type IV pilus secretin PilQ family protein Machinery gene
  OCV49_RS01180 aroK 261422..261940 (+) 519 WP_004729664.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 38221.73 Da        Isoelectric Point: 6.2417

>NTDB_id=92170 OCV49_RS01155 WP_102296354.1 256759..257784(+) (pilM) [Vibrio lentus strain LMG 21034]
MGSSLITGIDINHHSIKAVVLKPVGELYALVGYKELPISDDIFTANHTLEYQKTVKKLKELRKELPFGCRNVAISVPDNT
VISKVLQIESELEDREKEFSIYQTFAHQSPFPIEELSLDFVKLEDKRFGKGSTSSYQVYATRKEVVESRADALTKAGFKP
VVVDTQAHGLLNIWQLASRMYPEKGNWLLVDVGVDQTSLGIIPQGSAPFYKDIAFGTQDLRSTDTPDDIESVFGTAEETH
KFIVNLIEKLKRQLQLYSSVNTLQPISGIWLMGEGASIPMVTEELERHFQLSCESLNPLSLFENKVAKRYRLPMDWQHFG
IAAGMAMSGLKWQGGKHVASN

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=92170 OCV49_RS01155 WP_102296354.1 256759..257784(+) (pilM) [Vibrio lentus strain LMG 21034]
ATGGGTTCATCATTAATTACAGGTATAGATATAAATCATCACAGCATCAAAGCCGTGGTACTAAAACCCGTGGGGGAGTT
GTATGCCCTAGTGGGATACAAAGAGCTGCCGATTTCGGACGACATTTTTACAGCTAACCATACTCTGGAGTATCAGAAAA
CTGTTAAGAAACTTAAAGAACTTAGGAAAGAACTGCCTTTTGGCTGTCGCAACGTCGCCATTTCGGTACCTGATAACACA
GTGATCAGCAAAGTACTGCAAATAGAGAGTGAGTTAGAAGACAGAGAAAAAGAGTTTTCGATCTATCAAACCTTTGCTCA
CCAGTCTCCCTTTCCTATCGAGGAGCTGAGTTTAGATTTTGTAAAGCTGGAAGACAAACGATTTGGTAAAGGATCGACAA
GCAGTTATCAGGTGTACGCCACTCGTAAAGAAGTAGTAGAGAGTCGAGCGGATGCTTTAACCAAGGCAGGTTTTAAACCT
GTAGTGGTGGATACGCAGGCGCATGGGTTACTCAATATCTGGCAGTTGGCTTCGCGCATGTATCCAGAAAAGGGTAATTG
GTTGCTGGTGGATGTGGGTGTCGACCAAACATCATTAGGCATCATTCCACAAGGTTCAGCCCCGTTTTACAAAGATATTG
CTTTTGGTACCCAAGATCTCCGTAGCACTGACACCCCTGATGATATCGAGAGCGTATTCGGCACCGCAGAGGAGACACAT
AAGTTCATTGTTAACTTGATTGAAAAGCTTAAGCGTCAGTTGCAGCTCTATTCCTCGGTCAATACGCTTCAACCGATCTC
AGGGATCTGGTTGATGGGTGAGGGTGCCAGCATTCCCATGGTCACCGAAGAGCTTGAGCGTCACTTTCAGCTGAGCTGTG
AGTCGCTAAACCCTTTATCTCTTTTTGAGAATAAGGTCGCCAAGAGATACCGACTGCCGATGGACTGGCAACACTTTGGA
ATTGCGGCTGGTATGGCGATGAGTGGGCTTAAATGGCAAGGGGGAAAGCATGTTGCATCAAATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(242-328)

Type IV pilus assembly protein PilM; (PilM_2)

(8-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio cholerae strain A1552

54.252

100

0.543
  pilM Vibrio campbellii strain DS40M4

49.56

100

0.496

Multiple sequence alignment