Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   OCV56_RS14725 Genome accession   NZ_AP025492
Coordinates   3271268..3272962 (-) Length   564 a.a.
NCBI ID   WP_190960479.1    Uniprot ID   -
Organism   Vibrio gigantis strain LMG 22741     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3266268..3277962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV56_RS14705 - 3266947..3267792 (-) 846 WP_086715773.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  OCV56_RS14710 - 3267862..3269379 (-) 1518 WP_086715775.1 SPOR domain-containing protein -
  OCV56_RS14715 aroB 3269459..3270547 (-) 1089 WP_086715777.1 3-dehydroquinate synthase -
  OCV56_RS14720 aroK 3270573..3271091 (-) 519 WP_009848907.1 shikimate kinase AroK -
  OCV56_RS14725 pilQ 3271268..3272962 (-) 1695 WP_190960479.1 type IV pilus secretin PilQ Machinery gene
  OCV56_RS14730 pilP 3273022..3273540 (-) 519 WP_086715781.1 pilus assembly protein PilP Machinery gene
  OCV56_RS14735 pilO 3273527..3274138 (-) 612 WP_086715787.1 type 4a pilus biogenesis protein PilO Machinery gene
  OCV56_RS14740 pilN 3274131..3274730 (-) 600 WP_086715791.1 PilN domain-containing protein Machinery gene
  OCV56_RS14745 pilM 3274714..3275739 (-) 1026 WP_086715793.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 564 a.a.        Molecular weight: 61390.96 Da        Isoelectric Point: 4.3431

>NTDB_id=92109 OCV56_RS14725 WP_190960479.1 3271268..3272962(-) (pilQ) [Vibrio gigantis strain LMG 22741]
MNKGLQGLIVSVILVFSMLSHAESLPNKLESIDFRVNKDKDAVIIIELATSTAVVDVQRAQEGLSIELINTQVDDDKLYL
LDVKDFATLVEGIEVYKETPSTRLLVTIASDYQYEYNLKDRFIEVVISKPVIDEASKEKSILEKEGKLISINFQDIPVRN
VLQLIADYNDFNLVVSDSVAGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKAELDLREQQALEKSRLEEELG
ELKSEIIKINFAKATDIADMIGGEGAVSMLSDRGSITIDERTNSLLIRELEENIAVIRGIIESLDIPVKQVQIEARIVTV
TEGNLDELGVRWGVSSTNGSFTVGGSIEGNHPSQITPYDDDGGNSAIDDYLNVNLGATSPNASSIAFQVAKLGSDTLLDL
ELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATSVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRP
GQVVKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSVSSTVDKVPLLGDLPVLGALFRRSYENVGKSELLIFVTPK
VVIQ

Nucleotide


Download         Length: 1695 bp        

>NTDB_id=92109 OCV56_RS14725 WP_190960479.1 3271268..3272962(-) (pilQ) [Vibrio gigantis strain LMG 22741]
ATGAACAAAGGGCTGCAAGGCTTAATTGTGTCTGTGATATTGGTTTTTAGCATGCTCAGCCATGCCGAGAGCTTACCTAA
TAAATTAGAGAGTATTGATTTTAGGGTAAACAAGGATAAAGACGCTGTTATCATCATTGAGCTAGCGACGAGCACCGCTG
TGGTGGATGTTCAACGTGCTCAGGAAGGCTTAAGTATCGAGTTAATCAATACTCAAGTTGATGACGACAAGCTCTATCTT
CTGGATGTGAAAGACTTCGCTACTTTAGTTGAAGGCATCGAAGTCTATAAAGAGACGCCAAGCACACGACTGTTGGTGAC
AATCGCGAGTGACTATCAGTATGAATACAACCTAAAAGATCGTTTTATTGAGGTCGTGATCAGCAAACCTGTTATCGATG
AAGCGTCTAAAGAAAAAAGCATTCTAGAGAAAGAGGGCAAGTTGATATCGATTAACTTTCAAGATATTCCAGTACGGAAC
GTCCTGCAGTTGATTGCCGACTATAACGATTTCAATCTCGTCGTGTCTGATTCGGTAGCCGGAAACCTGACGTTACGCTT
AGATGGCGTACCTTGGCAGCAAGTTCTCGACATTATCTTGCAAGTTAAAGGCTTGGATAAGCGTGTTGATGGCAATGTCA
TCCTGGTTGCGCCAAAAGCGGAGCTCGATCTTCGAGAGCAACAAGCGTTAGAGAAGTCTCGTTTGGAAGAGGAGTTGGGG
GAGCTTAAGTCAGAAATCATCAAGATTAACTTTGCTAAAGCCACCGACATTGCCGATATGATTGGCGGTGAAGGCGCGGT
AAGCATGTTATCTGATCGCGGTTCGATTACCATTGATGAGCGCACTAACTCTTTGTTGATTCGTGAGTTGGAGGAGAACA
TTGCCGTGATACGAGGCATCATTGAATCCTTAGATATTCCCGTGAAACAGGTGCAGATAGAGGCGCGTATCGTGACCGTC
ACTGAGGGTAATCTTGATGAGCTTGGCGTGCGCTGGGGTGTTTCCTCGACCAACGGAAGCTTCACCGTTGGCGGTTCAAT
AGAAGGTAATCATCCATCACAAATCACACCGTATGACGATGATGGTGGCAACAGTGCGATTGATGACTACCTCAACGTTA
ACTTGGGGGCGACATCGCCGAATGCATCGAGCATTGCATTTCAGGTCGCCAAGCTTGGCTCGGATACTTTGCTCGACCTT
GAACTGTCGGCACTGCAACAAGAGTCGAAAGCTGAGATTATTTCTAGCCCACGCTTAATCACCACCAATAAAAAGCCCGC
TTATATTGAGCAAGGTACTGAAATTCCTTACTTAGAGTCTTCTTCAAGTGGTGCAACGTCGGTCGCATTTAAGAAAGCGG
TATTGAGCCTCAAGGTGACTCCGCAGATCACACCCGACAATCGTTTGGTATTGGATTTGAGCGTGACTCAAGATAGACCA
GGGCAAGTGGTCAAAACCGGAACGGGTGAAGCGGTAGCAATTGACACGCAAAGAATAGGCACGCAAGTGCTTGTTAATAA
TGGTGAAACGGTCGTTCTTGGCGGGATATTTCAGCATAGCGTGAGCAGCACGGTGGATAAAGTTCCTCTGTTGGGAGACC
TGCCAGTTTTGGGTGCATTGTTCCGTCGCAGCTATGAAAATGTGGGTAAAAGTGAACTACTTATTTTTGTCACGCCTAAA
GTTGTGATTCAGTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(245-310)

Bacterial type II and III secretion system protein (Secretin)

(404-562)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

80.146

97.34

0.78
  pilQ Vibrio cholerae strain A1552

80.146

97.34

0.78
  pilQ Vibrio campbellii strain DS40M4

80.515

96.454

0.777
  pilQ Legionella pneumophila strain ERS1305867

42.674

96.809

0.413
  pilQ Legionella pneumophila strain Lp02

42.674

96.809

0.413
  pilQ Pseudomonas aeruginosa PAK

41.039

98.936

0.406
  comQ Acinetobacter baylyi ADP1

38.869

100

0.39
  pilQ Acinetobacter baumannii D1279779

37.478

100

0.385
  pilQ Acinetobacter baumannii strain A118

37.478

100

0.385

Multiple sequence alignment