Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | OCV50_RS11815 | Genome accession | NZ_AP025487 |
| Coordinates | 2723058..2723477 (+) | Length | 139 a.a. |
| NCBI ID | WP_261903136.1 | Uniprot ID | - |
| Organism | Vibrio fortis strain LMG 21557 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2718058..2728477
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OCV50_RS11800 | pdhR | 2720001..2720768 (-) | 768 | WP_239841201.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| OCV50_RS11805 | ampD | 2721217..2721765 (-) | 549 | WP_261903134.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| OCV50_RS11810 | nadC | 2721914..2722804 (+) | 891 | WP_261903135.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| OCV50_RS11815 | pilA | 2723058..2723477 (+) | 420 | WP_261903136.1 | pilin | Machinery gene |
| OCV50_RS11820 | pilB | 2723486..2725171 (+) | 1686 | WP_261903137.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| OCV50_RS11825 | pilC | 2725199..2726428 (+) | 1230 | WP_261903138.1 | type II secretion system F family protein | Machinery gene |
| OCV50_RS11830 | pilD | 2726488..2727357 (+) | 870 | WP_261903139.1 | A24 family peptidase | Machinery gene |
| OCV50_RS11835 | coaE | 2727361..2727969 (+) | 609 | WP_261903140.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 139 a.a. Molecular weight: 14360.24 Da Isoelectric Point: 6.2236
>NTDB_id=92008 OCV50_RS11815 WP_261903136.1 2723058..2723477(+) (pilA) [Vibrio fortis strain LMG 21557]
MKRKQTKQKGFTLIELMIVVAIIGALSAIAVPAYQNYVAKSEAASGLATLRSVMTTAELFYQENGVASAATVAELGTAAN
ASDLGTITSSLSGALPTLSFEFGANSSLTSSDTITFTRSTNAGWNCARSGNVPQIDGCQ
MKRKQTKQKGFTLIELMIVVAIIGALSAIAVPAYQNYVAKSEAASGLATLRSVMTTAELFYQENGVASAATVAELGTAAN
ASDLGTITSSLSGALPTLSFEFGANSSLTSSDTITFTRSTNAGWNCARSGNVPQIDGCQ
Nucleotide
Download Length: 420 bp
>NTDB_id=92008 OCV50_RS11815 WP_261903136.1 2723058..2723477(+) (pilA) [Vibrio fortis strain LMG 21557]
ATGAAAAGAAAACAAACAAAGCAGAAAGGTTTTACGTTAATTGAGTTGATGATTGTGGTAGCGATTATTGGTGCCTTGTC
AGCAATAGCTGTCCCTGCTTACCAAAATTATGTTGCCAAAAGTGAAGCGGCATCAGGATTAGCAACCCTAAGGTCGGTGA
TGACCACTGCAGAGTTGTTTTATCAGGAGAATGGAGTCGCATCTGCAGCAACAGTAGCTGAATTAGGAACAGCTGCCAAC
GCTAGTGATTTAGGAACAATCACATCTAGTTTATCAGGGGCGCTCCCAACATTATCATTTGAGTTTGGTGCCAATAGTTC
ATTAACATCTTCAGATACCATTACTTTCACTCGTAGTACTAATGCTGGTTGGAACTGTGCCCGATCGGGGAATGTTCCAC
AAATTGATGGCTGCCAGTAA
ATGAAAAGAAAACAAACAAAGCAGAAAGGTTTTACGTTAATTGAGTTGATGATTGTGGTAGCGATTATTGGTGCCTTGTC
AGCAATAGCTGTCCCTGCTTACCAAAATTATGTTGCCAAAAGTGAAGCGGCATCAGGATTAGCAACCCTAAGGTCGGTGA
TGACCACTGCAGAGTTGTTTTATCAGGAGAATGGAGTCGCATCTGCAGCAACAGTAGCTGAATTAGGAACAGCTGCCAAC
GCTAGTGATTTAGGAACAATCACATCTAGTTTATCAGGGGCGCTCCCAACATTATCATTTGAGTTTGGTGCCAATAGTTC
ATTAACATCTTCAGATACCATTACTTTCACTCGTAGTACTAATGCTGGTTGGAACTGTGCCCGATCGGGGAATGTTCCAC
AAATTGATGGCTGCCAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
57.554 |
100 |
0.576 |
| pilA | Pseudomonas aeruginosa PAK |
45.455 |
94.964 |
0.432 |
| pilA | Vibrio cholerae strain A1552 |
42.105 |
95.683 |
0.403 |
| pilA | Vibrio cholerae C6706 |
42.105 |
95.683 |
0.403 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
42.105 |
95.683 |
0.403 |
| pilA | Acinetobacter baumannii strain A118 |
37.589 |
100 |
0.381 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
39.231 |
93.525 |
0.367 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
37.226 |
98.561 |
0.367 |