Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OCV50_RS11825 Genome accession   NZ_AP025487
Coordinates   2725199..2726428 (+) Length   409 a.a.
NCBI ID   WP_261903138.1    Uniprot ID   -
Organism   Vibrio fortis strain LMG 21557     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2720199..2731428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV50_RS11805 ampD 2721217..2721765 (-) 549 WP_261903134.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  OCV50_RS11810 nadC 2721914..2722804 (+) 891 WP_261903135.1 carboxylating nicotinate-nucleotide diphosphorylase -
  OCV50_RS11815 pilA 2723058..2723477 (+) 420 WP_261903136.1 pilin Machinery gene
  OCV50_RS11820 pilB 2723486..2725171 (+) 1686 WP_261903137.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OCV50_RS11825 pilC 2725199..2726428 (+) 1230 WP_261903138.1 type II secretion system F family protein Machinery gene
  OCV50_RS11830 pilD 2726488..2727357 (+) 870 WP_261903139.1 A24 family peptidase Machinery gene
  OCV50_RS11835 coaE 2727361..2727969 (+) 609 WP_261903140.1 dephospho-CoA kinase -
  OCV50_RS11840 zapD 2728002..2728742 (+) 741 WP_239841209.1 cell division protein ZapD -
  OCV50_RS11845 yacG 2728814..2729011 (+) 198 WP_239841210.1 DNA gyrase inhibitor YacG -
  OCV50_RS11850 rplS 2729452..2729805 (-) 354 WP_032549758.1 50S ribosomal protein L19 -
  OCV50_RS11855 trmD 2729848..2730606 (-) 759 WP_239841211.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  OCV50_RS11860 rimM 2730634..2731188 (-) 555 WP_032549760.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45352.58 Da        Isoelectric Point: 10.3821

>NTDB_id=92010 OCV50_RS11825 WP_261903138.1 2725199..2726428(+) (pilC) [Vibrio fortis strain LMG 21557]
MAIKPKQSQLKNYHWRGINSSGKKVSGQTLALTELEVRDKLRDQHIQIKKIKKKNISAFTRLTHRVKTKDITLLTRQLAT
MLATGVPIIQAIKLVSDNHRKAEMKSILSQICKGVEAGTPLSKAMRTASRHFDDLYTDLVATGELSGNLAEVFERLANYR
EKSERLRSKVIKALIYPVMVVVTALTVSFLMLTMVIPEFESMFSGFGADLPWFTAKVMSLSHWMQAYSLYTLLGLVGIVL
FVIQARKRSYSIRLTISRLGLKLPIIGGVIAKASIAKFSRTLSTSFSSGIPILTSLRTTAKTTGNVHFESAITEVHKETA
AGMPMYIAMRNSQAFPEMVLQMVMIGEESGNLDEMLTKVATIYEFEVDDTVDNLGKILEPVIIVFLGSVVGGLVVAMYLP
IFNLMSVLG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=92010 OCV50_RS11825 WP_261903138.1 2725199..2726428(+) (pilC) [Vibrio fortis strain LMG 21557]
ATGGCAATCAAACCGAAACAATCACAATTAAAAAACTATCATTGGAGAGGAATTAACAGCTCGGGAAAGAAGGTTTCAGG
GCAAACCTTGGCGCTCACTGAGCTTGAAGTCAGAGACAAACTTCGCGATCAGCACATTCAGATTAAGAAGATAAAGAAAA
AAAACATCTCAGCATTCACTCGCCTGACTCATCGAGTCAAAACAAAAGACATCACCCTGCTGACCCGACAATTGGCAACC
ATGCTGGCCACTGGTGTTCCCATCATCCAAGCCATCAAGTTAGTTTCAGATAACCACAGAAAAGCAGAAATGAAATCGAT
TCTGTCGCAGATATGCAAAGGTGTAGAAGCGGGTACCCCCTTATCAAAGGCGATGAGAACCGCGAGCCGTCATTTTGATG
ACTTGTATACCGACCTTGTCGCGACAGGAGAACTATCGGGAAACTTAGCTGAAGTATTTGAAAGACTGGCCAACTATCGG
GAAAAGAGTGAACGCTTAAGATCCAAAGTCATAAAAGCGCTTATCTATCCGGTGATGGTGGTCGTCACCGCCTTAACGGT
CTCATTCCTAATGCTAACCATGGTGATCCCTGAGTTTGAATCCATGTTCTCTGGTTTTGGCGCTGATCTGCCTTGGTTCA
CCGCCAAGGTGATGTCGTTGTCGCACTGGATGCAAGCTTATAGTCTCTATACCCTGCTTGGCTTGGTTGGCATCGTGCTA
TTCGTGATTCAAGCTCGCAAACGATCCTATTCCATAAGGCTCACCATCAGTCGGCTAGGATTAAAACTGCCGATTATCGG
TGGCGTTATTGCTAAAGCCTCAATCGCTAAATTCAGTCGCACGCTATCAACCAGTTTTAGCTCAGGTATCCCGATATTAA
CCAGCCTCAGAACCACGGCCAAAACCACTGGCAACGTACACTTCGAATCCGCCATTACTGAAGTTCACAAAGAGACCGCG
GCAGGGATGCCAATGTATATCGCAATGCGCAACAGCCAAGCCTTTCCAGAGATGGTGCTGCAAATGGTGATGATAGGTGA
AGAGTCCGGCAATCTCGATGAAATGCTCACTAAGGTCGCCACCATTTATGAATTCGAAGTAGACGATACCGTTGATAACT
TGGGTAAAATCTTAGAACCGGTCATCATTGTTTTCCTTGGTTCTGTCGTCGGTGGTTTAGTGGTTGCGATGTACTTACCG
ATCTTTAACCTAATGAGTGTGTTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)

Type II secretion system (T2SS), protein F (T2SSF)

(75-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

78

97.8

0.763
  pilC Vibrio campbellii strain DS40M4

69.327

98.044

0.68
  pilC Legionella pneumophila strain ERS1305867

42.607

97.555

0.416
  pilC Acinetobacter baumannii D1279779

41.565

100

0.416
  pilC Pseudomonas stutzeri DSM 10701

41.832

98.778

0.413
  pilC Acinetobacter baylyi ADP1

41.814

97.066

0.406
  pilG Neisseria gonorrhoeae MS11

38.847

97.555

0.379
  pilG Neisseria meningitidis 44/76-A

38.596

97.555

0.377

Multiple sequence alignment