Detailed information NTG0092011

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OCV50_RS11830
• Genome accession: NZ_AP025487
• Coordinates: 2726488..2727357 (+)
• Length: 289 a.a.
• NCBI ID: WP_261903139.1
• Uniprot ID: -
• Organism: Vibrio fortis strain LMG 21557
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2721488..2732357

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCV50_RS11810	nadC	2721914..2722804 (+)	891	WP_261903135.1	carboxylating nicotinate-nucleotide diphosphorylase	-
OCV50_RS11815	pilA	2723058..2723477 (+)	420	WP_261903136.1	pilin	Machinery gene
OCV50_RS11820	pilB	2723486..2725171 (+)	1686	WP_261903137.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OCV50_RS11825	pilC	2725199..2726428 (+)	1230	WP_261903138.1	type II secretion system F family protein	Machinery gene
OCV50_RS11830	pilD	2726488..2727357 (+)	870	WP_261903139.1	A24 family peptidase	Machinery gene
OCV50_RS11835	coaE	2727361..2727969 (+)	609	WP_261903140.1	dephospho-CoA kinase	-
OCV50_RS11840	zapD	2728002..2728742 (+)	741	WP_239841209.1	cell division protein ZapD	-
OCV50_RS11845	yacG	2728814..2729011 (+)	198	WP_239841210.1	DNA gyrase inhibitor YacG	-
OCV50_RS11850	rplS	2729452..2729805 (-)	354	WP_032549758.1	50S ribosomal protein L19	-
OCV50_RS11855	trmD	2729848..2730606 (-)	759	WP_239841211.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
OCV50_RS11860	rimM	2730634..2731188 (-)	555	WP_032549760.1	ribosome maturation factor RimM	-
OCV50_RS11865	rpsP	2731216..2731464 (-)	249	WP_004410028.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32573.83 Da
• Isoelectric Point: 6.8277

>NTDB_id=92011 OCV50_RS11830 WP_261903139.1 2726488..2727357(+) (pilD) [Vibrio fortis strain LMG 21557]
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIMMEREWQQECSESFPDYKIPMPEGTYNLSVPRSACPKCETQIRAI
DNIPVLSWLLLKGKCRKCSNPISPRYPFVELLTAVMCSFVAVHFGFSYYALALIFFTFALIAATFIDLDTMLLPDQITLP
LVWSGIALALFGISPISLQDSIIGAMAGYLALWSVYWLFKLVTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWISLIWGENIMAWYFTSVLGI

Nucleotide

• Length: 870 bp

>NTDB_id=92011 OCV50_RS11830 WP_261903139.1 2726488..2727357(+) (pilD) [Vibrio fortis strain LMG 21557]
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCCGTATTAGCTTTTATCTTCAGCCTACTTATCGGTAGTTTTCTCAA
CGTTGTTATCCATCGCCTACCCATTATGATGGAGCGAGAATGGCAACAAGAGTGCTCAGAAAGCTTTCCTGACTACAAAA
TCCCTATGCCAGAGGGAACATACAACCTTAGTGTGCCTCGTTCGGCATGCCCAAAGTGTGAAACACAAATTCGAGCTATT
GATAACATCCCTGTGCTCAGTTGGTTACTCCTGAAAGGCAAATGTCGAAAATGTTCAAACCCTATCAGCCCACGCTACCC
TTTTGTTGAGTTGCTAACTGCAGTGATGTGTAGCTTCGTTGCTGTTCATTTTGGCTTTAGCTACTACGCGCTGGCTCTGA
TCTTTTTTACCTTTGCCTTGATTGCCGCGACCTTCATCGACCTTGATACCATGTTACTGCCTGATCAAATCACCTTACCG
TTAGTCTGGTCGGGAATTGCGCTTGCGTTGTTTGGCATTAGCCCTATCTCCCTTCAAGACTCCATCATTGGGGCAATGGC
AGGCTACTTAGCTTTGTGGTCTGTCTATTGGCTATTCAAGCTAGTTACAGGCAAAGAAGGCATGGGCTATGGTGATTTCA
AGCTTCTTGCGGCATTAGGCGCTTGGCTTGGTTGGCAGCACTTACCTATGATCATATTGCTCTCTTCGCTTGTTGGTCTC
GTATTTGGTTTGATCCAACTGCGACTGAAACAGCAAGGCATCGATAAAGCCTTTCCTTTTGGTCCTTACCTCGCCATTGC
TGGTTGGATAAGTCTGATTTGGGGCGAGAACATTATGGCTTGGTATTTTACTTCGGTTTTAGGAATTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	76.125	100	0.761
pilD	Vibrio cholerae strain A1552	68.75	99.654	0.685
pilD	Acinetobacter baumannii D1279779	52.239	92.734	0.484
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	46.57	95.848	0.446