Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   VNN42_RS07315 Genome accession   NZ_CP141691
Coordinates   1471571..1471876 (+) Length   101 a.a.
NCBI ID   WP_029343537.1    Uniprot ID   -
Organism   Lactococcus petauri strain UCD-BR1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1466571..1476876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN42_RS07295 (VNN42_07295) guaB 1467681..1469162 (+) 1482 WP_003133714.1 IMP dehydrogenase -
  VNN42_RS07300 (VNN42_07300) rpsU 1469288..1469464 (+) 177 WP_003134539.1 30S ribosomal protein S21 -
  VNN42_RS07305 (VNN42_07305) comGA 1469650..1470594 (+) 945 WP_195916935.1 competence type IV pilus ATPase ComGA Machinery gene
  VNN42_RS07310 (VNN42_07310) comGB 1470533..1471552 (+) 1020 WP_255566448.1 competence type IV pilus assembly protein ComGB Machinery gene
  VNN42_RS07315 (VNN42_07315) comYC 1471571..1471876 (+) 306 WP_029343537.1 competence type IV pilus major pilin ComGC Machinery gene
  VNN42_RS07320 (VNN42_07320) comGD 1471851..1472267 (+) 417 WP_019336004.1 competence type IV pilus minor pilin ComGD Machinery gene
  VNN42_RS07325 (VNN42_07325) - 1472299..1472397 (+) 99 WP_255566393.1 hypothetical protein -
  VNN42_RS07330 (VNN42_07330) comGE 1472370..1472534 (+) 165 WP_019336003.1 competence system putative prepilin ComGE -
  VNN42_RS07335 (VNN42_07335) comYF 1472689..1472955 (+) 267 WP_255566449.1 competence type IV pilus minor pilin ComGF Machinery gene
  VNN42_RS07340 (VNN42_07340) - 1473187..1474032 (+) 846 WP_019336001.1 zinc ABC transporter substrate-binding protein -
  VNN42_RS07345 (VNN42_07345) - 1474103..1474987 (-) 885 WP_019336000.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11373.35 Da        Isoelectric Point: 10.2213

>NTDB_id=918264 VNN42_RS07315 WP_029343537.1 1471571..1471876(+) (comYC) [Lactococcus petauri strain UCD-BR1]
MKKKRIKAFTLIEMLVVLLIISVLLLLFVPNLAKEKKNIQNTGQTAVVKVVEGQAELYQLDKQDSPNLGKLVSDGLITQK
QADSYNDYYTKNPNAKRNVPN

Nucleotide


Download         Length: 306 bp        

>NTDB_id=918264 VNN42_RS07315 WP_029343537.1 1471571..1471876(+) (comYC) [Lactococcus petauri strain UCD-BR1]
ATGAAAAAAAAGAGAATCAAAGCTTTTACTTTGATTGAAATGCTTGTCGTCTTACTTATTATCAGTGTGTTACTTTTATT
GTTTGTCCCAAATTTGGCTAAAGAAAAGAAGAATATCCAAAATACGGGTCAAACAGCGGTTGTTAAGGTTGTCGAAGGTC
AAGCCGAACTTTATCAACTTGATAAACAGGATAGTCCTAACTTAGGGAAGCTTGTCTCCGACGGTTTAATTACGCAAAAA
CAAGCCGATAGCTACAATGATTATTATACCAAGAACCCTAATGCAAAACGTAATGTACCGAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus mutans UA140

64.356

100

0.644
  comYC Streptococcus mutans UA159

64.356

100

0.644
  comYC Streptococcus gordonii str. Challis substr. CH1

62.745

100

0.634
  comGC/cglC Streptococcus mitis SK321

63.636

98.02

0.624
  comGC Lactococcus lactis subsp. cremoris KW2

62

99.01

0.614
  comGC/cglC Streptococcus pneumoniae D39

59.596

98.02

0.584
  comGC/cglC Streptococcus pneumoniae Rx1

59.596

98.02

0.584
  comGC/cglC Streptococcus pneumoniae R6

59.596

98.02

0.584
  comGC/cglC Streptococcus pneumoniae TIGR4

59.596

98.02

0.584
  comGC/cglC Streptococcus mitis NCTC 12261

62.637

90.099

0.564
  comYC Streptococcus suis isolate S10

56.79

80.198

0.455
  comGC Staphylococcus aureus MW2

50.633

78.218

0.396
  comGC Staphylococcus aureus N315

50.633

78.218

0.396