Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   VNN42_RS07320 Genome accession   NZ_CP141691
Coordinates   1471851..1472267 (+) Length   138 a.a.
NCBI ID   WP_019336004.1    Uniprot ID   -
Organism   Lactococcus petauri strain UCD-BR1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1466851..1477267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN42_RS07295 (VNN42_07295) guaB 1467681..1469162 (+) 1482 WP_003133714.1 IMP dehydrogenase -
  VNN42_RS07300 (VNN42_07300) rpsU 1469288..1469464 (+) 177 WP_003134539.1 30S ribosomal protein S21 -
  VNN42_RS07305 (VNN42_07305) comGA 1469650..1470594 (+) 945 WP_195916935.1 competence type IV pilus ATPase ComGA Machinery gene
  VNN42_RS07310 (VNN42_07310) comGB 1470533..1471552 (+) 1020 WP_255566448.1 competence type IV pilus assembly protein ComGB Machinery gene
  VNN42_RS07315 (VNN42_07315) comYC 1471571..1471876 (+) 306 WP_029343537.1 competence type IV pilus major pilin ComGC Machinery gene
  VNN42_RS07320 (VNN42_07320) comGD 1471851..1472267 (+) 417 WP_019336004.1 competence type IV pilus minor pilin ComGD Machinery gene
  VNN42_RS07325 (VNN42_07325) - 1472299..1472397 (+) 99 WP_255566393.1 hypothetical protein -
  VNN42_RS07330 (VNN42_07330) comGE 1472370..1472534 (+) 165 WP_019336003.1 competence system putative prepilin ComGE -
  VNN42_RS07335 (VNN42_07335) comYF 1472689..1472955 (+) 267 WP_255566449.1 competence type IV pilus minor pilin ComGF Machinery gene
  VNN42_RS07340 (VNN42_07340) - 1473187..1474032 (+) 846 WP_019336001.1 zinc ABC transporter substrate-binding protein -
  VNN42_RS07345 (VNN42_07345) - 1474103..1474987 (-) 885 WP_019336000.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15767.39 Da        Isoelectric Point: 9.9392

>NTDB_id=918265 VNN42_RS07320 WP_019336004.1 1471851..1472267(+) (comGD) [Lactococcus petauri strain UCD-BR1]
MQNVMYRIKALTLLESLLVLFLCSSVLFLFSGSVKQSVRIARAEIFILQFERLYKDTQRMAGLKGQQQTLSASNGTLYSH
EEVLKVPEEVEINDFSITFDQKSGNSSLQKITIFLPYQKKTISYQLEIGSGKYKKKIT

Nucleotide


Download         Length: 417 bp        

>NTDB_id=918265 VNN42_RS07320 WP_019336004.1 1471851..1472267(+) (comGD) [Lactococcus petauri strain UCD-BR1]
ATGCAAAACGTAATGTACCGAATTAAAGCTTTGACCTTACTAGAGAGTTTACTAGTCCTTTTCCTTTGCTCTTCTGTTCT
TTTTCTCTTTTCAGGTTCGGTCAAACAAAGTGTCAGGATAGCACGCGCAGAGATTTTTATTTTACAATTTGAACGACTTT
ATAAGGATACCCAGCGTATGGCAGGATTAAAGGGACAGCAACAGACATTGAGTGCGAGTAATGGCACACTATACAGCCAC
GAGGAAGTACTGAAAGTTCCAGAGGAGGTTGAAATAAATGATTTTTCTATTACTTTTGATCAAAAATCAGGCAACTCGAG
CCTACAAAAAATTACAATATTTCTTCCTTATCAGAAAAAAACTATCTCTTATCAATTGGAAATTGGAAGCGGGAAATATA
AGAAAAAAATCACTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

49.275

100

0.493
  comYD Streptococcus mutans UA140

42.424

95.652

0.406
  comYD Streptococcus mutans UA159

42.424

95.652

0.406
  comGD/cglD Streptococcus mitis SK321

41.085

93.478

0.384
  comGD/cglD Streptococcus pneumoniae TIGR4

40.31

93.478

0.377
  comGD/cglD Streptococcus mitis NCTC 12261

39.231

94.203

0.37
  comGD/cglD Streptococcus pneumoniae Rx1

38.76

93.478

0.362
  comGD/cglD Streptococcus pneumoniae D39

38.76

93.478

0.362
  comGD/cglD Streptococcus pneumoniae R6

38.76

93.478

0.362