Detailed information
Bioinformatically predicted
Overview
| Name | comYF | Type | Machinery gene |
| Locus tag | VNN42_RS07335 | Genome accession | NZ_CP141691 |
| Coordinates | 1472689..1472955 (+) | Length | 88 a.a. |
| NCBI ID | WP_255566449.1 | Uniprot ID | - |
| Organism | Lactococcus petauri strain UCD-BR1 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1467689..1477955
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VNN42_RS07300 (VNN42_07300) | rpsU | 1469288..1469464 (+) | 177 | WP_003134539.1 | 30S ribosomal protein S21 | - |
| VNN42_RS07305 (VNN42_07305) | comGA | 1469650..1470594 (+) | 945 | WP_195916935.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| VNN42_RS07310 (VNN42_07310) | comGB | 1470533..1471552 (+) | 1020 | WP_255566448.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| VNN42_RS07315 (VNN42_07315) | comYC | 1471571..1471876 (+) | 306 | WP_029343537.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| VNN42_RS07320 (VNN42_07320) | comGD | 1471851..1472267 (+) | 417 | WP_019336004.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| VNN42_RS07325 (VNN42_07325) | - | 1472299..1472397 (+) | 99 | WP_255566393.1 | hypothetical protein | - |
| VNN42_RS07330 (VNN42_07330) | comGE | 1472370..1472534 (+) | 165 | WP_019336003.1 | competence system putative prepilin ComGE | - |
| VNN42_RS07335 (VNN42_07335) | comYF | 1472689..1472955 (+) | 267 | WP_255566449.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| VNN42_RS07340 (VNN42_07340) | - | 1473187..1474032 (+) | 846 | WP_019336001.1 | zinc ABC transporter substrate-binding protein | - |
| VNN42_RS07345 (VNN42_07345) | - | 1474103..1474987 (-) | 885 | WP_019336000.1 | RluA family pseudouridine synthase | - |
| VNN42_RS07350 (VNN42_07350) | - | 1475063..1477351 (+) | 2289 | WP_019335999.1 | PBP1A family penicillin-binding protein | - |
Sequence
Protein
Download Length: 88 a.a. Molecular weight: 10169.57 Da Isoelectric Point: 10.1554
>NTDB_id=918266 VNN42_RS07335 WP_255566449.1 1472689..1472955(+) (comYF) [Lactococcus petauri strain UCD-BR1]
MRSELEGASLDKVENNYLYVRKNVNLRFGLSSKGDFRKTNANGRGYQPMIHHVKNVKISQEGEQVKIILSFEKGGDRIFL
YKFSEKES
MRSELEGASLDKVENNYLYVRKNVNLRFGLSSKGDFRKTNANGRGYQPMIHHVKNVKISQEGEQVKIILSFEKGGDRIFL
YKFSEKES
Nucleotide
Download Length: 267 bp
>NTDB_id=918266 VNN42_RS07335 WP_255566449.1 1472689..1472955(+) (comYF) [Lactococcus petauri strain UCD-BR1]
CTGAGAAGCGAACTTGAGGGAGCAAGCTTAGATAAGGTGGAAAATAACTATCTTTATGTCCGCAAAAATGTCAATCTAAG
ATTTGGACTTTCCTCCAAAGGAGATTTTCGGAAAACTAATGCTAATGGGCGAGGTTATCAACCCATGATCCATCATGTAA
AAAATGTTAAAATCAGCCAGGAGGGAGAGCAGGTAAAAATTATCTTGTCTTTTGAAAAAGGAGGAGACCGCATATTTCTT
TACAAGTTCTCAGAAAAAGAAAGTTAA
CTGAGAAGCGAACTTGAGGGAGCAAGCTTAGATAAGGTGGAAAATAACTATCTTTATGTCCGCAAAAATGTCAATCTAAG
ATTTGGACTTTCCTCCAAAGGAGATTTTCGGAAAACTAATGCTAATGGGCGAGGTTATCAACCCATGATCCATCATGTAA
AAAATGTTAAAATCAGCCAGGAGGGAGAGCAGGTAAAAATTATCTTGTCTTTTGAAAAAGGAGGAGACCGCATATTTCTT
TACAAGTTCTCAGAAAAAGAAAGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYF | Streptococcus mutans UA140 |
51.724 |
98.864 |
0.511 |
| comYF | Streptococcus mutans UA159 |
50.575 |
98.864 |
0.5 |
| comGF | Lactococcus lactis subsp. cremoris KW2 |
50.588 |
96.591 |
0.489 |
| comGF/cglF | Streptococcus pneumoniae TIGR4 |
39.326 |
100 |
0.398 |
| comGF/cglF | Streptococcus pneumoniae D39 |
39.326 |
100 |
0.398 |
| comGF/cglF | Streptococcus pneumoniae Rx1 |
39.326 |
100 |
0.398 |
| comGF/cglF | Streptococcus pneumoniae R6 |
39.326 |
100 |
0.398 |
| comGF/cglF | Streptococcus mitis NCTC 12261 |
35.955 |
100 |
0.364 |