NTDB

Overview

Name	comYC	Type	Machinery gene
Locus tag	SM121_RS01090	Genome accession	NZ_CP139418
Coordinates	225089..225406 (-)	Length	105 a.a.
NCBI ID	WP_003013558.1	Uniprot ID	-
Organism	Streptococcus dentalis strain S1
Function	dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 220089..230406

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SM121_RS01055 (SM121_01055)	-	220543..221274 (-)	732	WP_320910981.1	type II CAAX endopeptidase family protein	-
SM121_RS01060 (SM121_01060)	-	221347..222540 (-)	1194	WP_003004202.1	acetate kinase	-
SM121_RS01065 (SM121_01065)	comYH	222592..223545 (-)	954	WP_155127115.1	class I SAM-dependent methyltransferase	Machinery gene
SM121_RS01070 (SM121_01070)	comGG	223576..224013 (-)	438	WP_320910982.1	competence type IV pilus minor pilin ComGG	-
SM121_RS01075 (SM121_01075)	comGF/cglF	224000..224452 (-)	453	WP_151190960.1	competence type IV pilus minor pilin ComGF	Machinery gene
SM121_RS01080 (SM121_01080)	comGE	224442..224729 (-)	288	WP_003004353.1	competence type IV pilus minor pilin ComGE	-
SM121_RS01085 (SM121_01085)	comYD	224695..225099 (-)	405	WP_003004513.1	competence type IV pilus minor pilin ComGD	Machinery gene
SM121_RS01090 (SM121_01090)	comYC	225089..225406 (-)	318	WP_003013558.1	competence type IV pilus major pilin ComGC	Machinery gene
SM121_RS01095 (SM121_01095)	comYB	225403..226434 (-)	1032	WP_320911301.1	competence type IV pilus assembly protein ComGB	Machinery gene
SM121_RS01100 (SM121_01100)	comYA	226367..227308 (-)	942	WP_155127112.1	competence type IV pilus ATPase ComGA	Machinery gene
SM121_RS01105 (SM121_01105)	-	227396..227785 (-)	390	WP_037615753.1	DUF1033 family protein	-
SM121_RS01110 (SM121_01110)	-	228007..229110 (-)	1104	WP_320910983.1	glycosyl hydrolase family 8	-

Sequence

Protein

Download Length: 105 a.a. Molecular weight: 11659.59 Da Isoelectric Point: 9.6248

                                >NTDB_id=909470 SM121_RS01090 WP_003013558.1 225089..225406(-) (comYC) [Streptococcus dentalis strain S1]

MKKIKTYKVKAFTLIEMLVVLLIISVLLLLFVPNLTKQKDSVKETGNAAVVKVVESQAELYELNHTNDQATLAKLIADGN

ITNKQAESYRAYYAKNSGETRAVAD

Nucleotide

Download Length: 318 bp

                                >NTDB_id=909470 SM121_RS01090 WP_003013558.1 225089..225406(-) (comYC) [Streptococcus dentalis strain S1]

ATGAAAAAAATAAAAACCTATAAGGTTAAAGCTTTTACACTTATTGAAATGTTGGTGGTCTTATTGATCATCAGTGTGCT

CTTATTGCTCTTTGTGCCGAATTTGACCAAGCAAAAAGACTCCGTGAAAGAGACAGGAAATGCAGCGGTTGTGAAGGTGG

TCGAAAGCCAGGCTGAATTGTATGAGCTCAATCATACCAATGACCAAGCCACTCTAGCAAAACTGATTGCGGATGGAAAT

ATTACCAACAAACAAGCTGAATCCTACCGTGCCTATTATGCGAAAAATAGTGGAGAAACTCGTGCGGTTGCAGATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-30)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comYC	Streptococcus gordonii str. Challis substr. CH1	75.238	100	0.752
comYC	Streptococcus mutans UA159	74.286	100	0.743
comYC	Streptococcus mutans UA140	74.286	100	0.743
comGC/cglC	Streptococcus mitis SK321	67.89	100	0.705
comGC/cglC	Streptococcus mitis NCTC 12261	66.364	100	0.695
comGC/cglC	Streptococcus pneumoniae Rx1	65.138	100	0.676
comGC/cglC	Streptococcus pneumoniae R6	65.138	100	0.676
comGC/cglC	Streptococcus pneumoniae TIGR4	65.138	100	0.676
comGC/cglC	Streptococcus pneumoniae D39	65.138	100	0.676
comGC	Lactococcus lactis subsp. cremoris KW2	58.654	99.048	0.581
comYC	Streptococcus suis isolate S10	66.292	84.762	0.562
comGC	Staphylococcus aureus N315	45.918	93.333	0.429
comGC	Staphylococcus aureus MW2	45.918	93.333	0.429

Detailed information NTG0909470