NTDB

Overview

Name	pilQ	Type	Machinery gene
Locus tag	R2B70_RS20185	Genome accession	NZ_CP137630
Coordinates	1121641..1122960 (+)	Length	439 a.a.
NCBI ID	WP_408867466.1	Uniprot ID	-
Organism	Aeromonas sp. XH
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1116641..1127960

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R2B70_RS05290 (R2B70_05290)	tapM	1117977..1119038 (+)	1062	WP_042078961.1	PilM family type IVa pilus assembly protein TapM	-
R2B70_RS05295 (R2B70_05295)	tapN	1119026..1119595 (+)	570	WP_209793419.1	PilN domain-containing protein	-
R2B70_RS05300 (R2B70_05300)	tapO	1119592..1120191 (+)	600	WP_042078964.1	PilO family type IV pilus biogenesis protein TapO	-
R2B70_RS05305 (R2B70_05305)	-	1120194..1120721 (+)	528	WP_042079004.1	pilus assembly protein PilP	-
R2B70_RS20180	-	1121338..1121616 (+)	279	Protein_1011	AMIN domain-containing protein	-
R2B70_RS20185	pilQ	1121641..1122960 (+)	1320	WP_408867466.1	type IV pilus secretin PilQ	Machinery gene
R2B70_RS05315 (R2B70_05315)	aroK	1123152..1123670 (+)	519	WP_042078966.1	shikimate kinase AroK	-
R2B70_RS05320 (R2B70_05320)	aroB	1123688..1124770 (+)	1083	WP_042078967.1	3-dehydroquinate synthase	-
R2B70_RS05325 (R2B70_05325)	-	1124760..1126307 (+)	1548	WP_042078968.1	SPOR domain-containing protein	-
R2B70_RS05330 (R2B70_05330)	-	1126377..1127249 (+)	873	WP_042078969.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	-

Sequence

Protein

Download Length: 439 a.a. Molecular weight: 47119.74 Da Isoelectric Point: 4.8191

                                >NTDB_id=899542 R2B70_RS20185 WP_408867466.1 1121641..1122960(+) (pilQ) [Aeromonas sp. XH]

MFIIEVKKRAATTAAKQYQGKPISLNFQDIPVRTVLQIIADFNNLNLVTTDSVAGNITLRLDGVPWEQALDIILKVRGLD

KRLDNNILLVAPADEIAAREKQQLESRSQVADLAPLYTEYLQINYAKAAEVAALLSSESTKLLSPRGAVSVDERTNVLVV

KDTADVIGNVKRMLDILDIPVKQVVIEARMVTIDDGFDEALGVRWGVTKTDGHGNGTSGTIEGNDGAGNNDGSSTITRPG

VEDRLNVNLPVTNAAGTLAFQVARLANGTLLDLELSALEKESKAEIIASPRVTTANQKPALIEQGTEIPYVESSSSGATS

VTFKKAVLSLKVTPQITPDNRVILDLTVTQDTKGETVPTGTGDAVSINAQSITTQVLVNNGETLVLGGIYQQTIKNDVSK

VPLLGDIPGLGYLFKKTTSENKKRELLIFVTPRIVTDAL

Nucleotide

Download Length: 1320 bp

                                >NTDB_id=899542 R2B70_RS20185 WP_408867466.1 1121641..1122960(+) (pilQ) [Aeromonas sp. XH]

ATGTTCATCATAGAGGTAAAGAAACGGGCGGCCACCACGGCGGCCAAGCAATATCAGGGCAAGCCGATATCCTTGAACTT

CCAGGATATTCCGGTGCGAACCGTGTTGCAGATCATCGCCGACTTCAACAATCTCAACCTGGTGACCACGGACTCCGTCG

CCGGCAACATCACCCTGCGCCTCGATGGGGTACCCTGGGAGCAGGCGCTGGACATCATCCTCAAGGTGAGGGGGCTGGAC

AAGCGGCTGGACAACAACATCCTGCTGGTGGCCCCGGCGGATGAAATCGCCGCTCGCGAGAAGCAGCAACTGGAGAGTCG

CAGCCAGGTGGCCGACCTTGCGCCTCTCTACACTGAATACCTGCAGATCAACTATGCCAAGGCAGCCGAAGTGGCCGCCC

TGCTCTCCTCCGAGAGCACCAAGCTGCTCTCCCCCAGGGGGGCGGTGAGCGTGGATGAGCGTACCAACGTGCTGGTGGTC

AAGGACACGGCGGACGTCATCGGCAACGTCAAGCGCATGCTGGACATCCTCGATATCCCGGTCAAGCAGGTGGTGATCGA

GGCGCGCATGGTGACCATAGACGACGGTTTCGACGAGGCGCTGGGGGTGCGCTGGGGCGTGACCAAGACGGACGGTCATG

GCAACGGCACCTCGGGCACCATAGAGGGGAATGACGGCGCCGGTAACAATGACGGTAGCTCCACCATCACGCGTCCCGGC

GTGGAAGACAGGCTCAACGTCAATCTGCCGGTGACTAATGCCGCCGGTACGCTGGCGTTCCAGGTCGCTCGTCTCGCCAA

CGGTACCCTGCTCGATCTTGAACTCTCCGCCCTCGAGAAGGAGAGCAAGGCCGAGATCATCGCCAGCCCCAGGGTCACCA

CCGCCAACCAGAAGCCGGCCCTGATCGAGCAGGGGACTGAGATCCCCTATGTAGAGTCCTCCTCCAGCGGGGCCACCTCG

GTCACCTTCAAGAAGGCGGTACTGAGCCTCAAGGTCACACCACAGATCACCCCGGACAACAGGGTTATCCTCGACTTGAC

CGTGACCCAGGACACCAAGGGGGAAACCGTGCCGACCGGTACTGGTGACGCAGTCTCCATCAATGCCCAGTCGATCACCA

CCCAGGTGCTGGTCAACAACGGCGAGACCCTGGTGCTTGGCGGCATCTATCAGCAGACGATTAAAAATGATGTCAGCAAG

GTGCCGCTGCTGGGGGATATCCCCGGCCTCGGCTACCTGTTCAAGAAAACCACCAGTGAAAACAAGAAGCGTGAACTGCT

GATTTTCGTGACCCCGAGGATAGTCACCGACGCCCTCTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(277-435)

Bacterial type II/III secretion system short domain (Secretin_N)

(119-183)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilQ	Vibrio cholerae strain A1552	60.095	95.9	0.576
pilQ	Vibrio cholerae O1 biovar El Tor strain E7946	60.095	95.9	0.576
pilQ	Vibrio campbellii strain DS40M4	58.962	96.583	0.569
comQ	Acinetobacter baylyi ADP1	45.275	100	0.469
pilQ	Legionella pneumophila strain Lp02	46.667	99.089	0.462
pilQ	Legionella pneumophila strain ERS1305867	46.667	99.089	0.462
pilQ	Pseudomonas aeruginosa PAK	46.296	98.405	0.456
pilQ	Acinetobacter baumannii strain A118	42.06	100	0.446
pilQ	Acinetobacter baumannii D1279779	42.06	100	0.446
pilQ	Neisseria meningitidis MC58	41.972	99.317	0.417
pilQ	Neisseria meningitidis M1080	41.972	99.317	0.417
pilQ	Neisseria gonorrhoeae strain FA1090	41.743	99.317	0.415
comE	Haemophilus influenzae Rd KW20	40.291	93.85	0.378
comE	Haemophilus influenzae 86-028NP	40.049	93.85	0.376

Detailed information NTG0899542